Factsheet for PGSC0003DMT400055541

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g008030.1.1	Tomato	plastid	95.02	95.02
TraesCS2D01G049400.1	Wheat	cytosol	19.9	45.45
TraesCS2B01G062900.1	Wheat	plastid	27.86	35.0
VIT_08s0040g01600.t01	Wine grape	nucleus, plastid	34.83	34.31
KRH32533	Soybean	plastid	31.34	33.16
KRH19921	Soybean	plastid	30.35	32.97
Os04t0194600-01	Rice	plastid	27.86	31.82
Zm00001d025033_P001	Maize	plastid	27.36	31.25
EES10469	Sorghum	plastid	27.36	31.07
PGSC0003DMT400052203	Potato	nucleus	35.82	31.03
PGSC0003DMT400090661	Potato	nucleus	36.82	26.52
PGSC0003DMT400067150	Potato	nucleus, plastid	33.83	20.8
PGSC0003DMT400094424	Potato	cytosol	22.89	18.78
PGSC0003DMT400095626	Potato	plastid	25.37	18.21
PGSC0003DMT400088049	Potato	cytosol	24.38	18.15
PGSC0003DMT400083148	Potato	nucleus	34.33	16.83
PGSC0003DMT400008728	Potato	nucleus	30.85	16.71
PGSC0003DMT400023981	Potato	nucleus	32.34	16.71
PGSC0003DMT400001613	Potato	nucleus	33.33	16.18
PGSC0003DMT400062327	Potato	nucleus	28.86	15.85
PGSC0003DMT400058534	Potato	nucleus	27.36	14.71
PGSC0003DMT400042166	Potato	cytosol	31.34	14.06
PGSC0003DMT400064164	Potato	nucleus	34.83	13.11

Protein Annotations

EntrezGene:102599511	MapMan:15.5.19	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887
UniProt:M1BY44	PFAM:PF03634	EnsemblPlantsGene:PGSC0003DMG400021568	PGSC:PGSC0003DMG400021568	EnsemblPlants:PGSC0003DMT400055541	PFscan:PS51369
PANTHER:PTHR31072	PANTHER:PTHR31072:SF71	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0002949CC1	RefSeq:XP_006354350.1
SEG:seg	:	:	:	:	:

Description

Proliferating cell nuclear antigen gene-controlling element binding factor [Source:PGSC_GENE;Acc:PGSC0003DMG400021568]

Coordinates

chr9:+:5366727..5367739

Molecular Weight (calculated)

21145.1 Da

IEP (calculated)

8.509

GRAVY (calculated)

-0.283

Length

201 amino acids

Sequence
(BLAST)

001: MGSEIVVSGA ISGAGNGSVN SEANDKTALA VVPTKKRNAL SVSSSKDRHT KVNGRGRRVR MPALCAARVF QLTKELGHRT DGETIEWLLR NAEPSIIAAT
101: GTGTIPATQV TTTSENIPLS QSQPSVLAPL TRATPVSGFP VGGGFFSMAP QSQPNCRLDL CQPSLEFSGN AYRHMPFTAL LLQPVTADEG EEKVAGEDGK
201: Q

Best Arabidopsis Sequence Match ( AT2G37000.1 )
(BLAST)

001: MIFQNVCRNE SNFNAIASES RSQTQFGVSK SSSSGGGCIS ARTKDRHTKV NGRSRRVTMP ALAAARIFQL TRELGHKTEG ETIEWLLSQA EPSIIAATGY
101: GTKLISNWVD VAADDSSSSS SMTSPQTQTQ TPQSPSCRLD LCQPIGIQYP VNGYSHMPFT AMLLEPMTTT AESEVEIAEE EERRRRHH

Arabidopsis Description

TCP11Transcription factor TCP11 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJK7]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.