Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH32533 | Soybean | plastid | 53.92 | 57.89 |
| KRH19921 | Soybean | plastid | 52.45 | 57.84 |
| TraesCS2D01G049400.1 | Wheat | cytosol | 23.04 | 53.41 |
| TraesCS2B01G062900.1 | Wheat | plastid | 34.8 | 44.38 |
| Os04t0194600-01 | Rice | plastid | 37.25 | 43.18 |
| Zm00001d025033_P001 | Maize | plastid | 35.78 | 41.48 |
| EES10469 | Sorghum | plastid | 34.8 | 40.11 |
| Solyc09g008030.1.1 | Tomato | plastid | 34.31 | 34.83 |
| PGSC0003DMT400055541 | Potato | plastid | 34.31 | 34.83 |
| VIT_16s0022g02480.t01 | Wine grape | nucleus | 24.02 | 28.99 |
| VIT_10s0042g00170.t01 | Wine grape | nucleus | 30.88 | 24.71 |
| VIT_14s0068g01690.t01 | Wine grape | nucleus | 31.86 | 21.96 |
| VIT_15s0048g01150.t01 | Wine grape | nucleus | 33.82 | 20.35 |
| VIT_01s0026g02200.t01 | Wine grape | nucleus | 34.31 | 19.83 |
| VIT_18s0117g00340.t01 | Wine grape | nucleus | 33.82 | 19.44 |
| VIT_17s0000g06020.t01 | Wine grape | nucleus | 34.31 | 19.02 |
| VIT_12s0035g00690.t01 | Wine grape | nucleus, plastid | 34.31 | 15.22 |
| VIT_02s0025g04590.t01 | Wine grape | nucleus | 29.9 | 14.84 |
Protein Annotations
| EntrezGene:100243103 | wikigene:100243103 | MapMan:15.5.19 | ProteinID:CCB57090 | ProteinID:CCB57090.1 | UniProt:F6HR41 |
| EMBL:FN596008 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR017887 | EntrezGene:LOC100243103 |
| wikigene:LOC100243103 | PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF71 | TIGR:TC68152 |
| InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI00015CADA6 | ArrayExpress:VIT_08s0040g01600 | EnsemblPlantsGene:VIT_08s0040g01600 | EnsemblPlants:VIT_08s0040g01600.t01 |
| unigene:Vvi.5317 | RefSeq:XP_002281963 | RefSeq:XP_002281963.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr8:-:12723147..12724562
Molecular Weight (calculated)
21700.5 Da
IEP (calculated)
8.364
GRAVY (calculated)
-0.507
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSEMNLHKF SSSEHSNPNS LTTAAASATA GGDSTKAELA PPPRKTASSS SRDRHTKVNG RGRRVRMPAL CAARIFQLTR ELGHRSDGET IEWLLRQAEP
101: SIIAATGTGT VPATSVSSSG TANPSSSTAT TACKVQPLTS VPSGHVPTGM FTMAPPSCRL DLCQPVTLEF PGNGYRHMPF TSLLLQSGTE EAEERHQEEV
201: LRQQ
101: SIIAATGTGT VPATSVSSSG TANPSSSTAT TACKVQPLTS VPSGHVPTGM FTMAPPSCRL DLCQPVTLEF PGNGYRHMPF TSLLLQSGTE EAEERHQEEV
201: LRQQ
001: MIFQNVCRNE SNFNAIASES RSQTQFGVSK SSSSGGGCIS ARTKDRHTKV NGRSRRVTMP ALAAARIFQL TRELGHKTEG ETIEWLLSQA EPSIIAATGY
101: GTKLISNWVD VAADDSSSSS SMTSPQTQTQ TPQSPSCRLD LCQPIGIQYP VNGYSHMPFT AMLLEPMTTT AESEVEIAEE EERRRRHH
101: GTKLISNWVD VAADDSSSSS SMTSPQTQTQ TPQSPSCRLD LCQPIGIQYP VNGYSHMPFT AMLLEPMTTT AESEVEIAEE EERRRRHH
Arabidopsis Description
TCP11Transcription factor TCP11 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJK7]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.