Factsheet for VIT_16s0022g02480.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0040g01600.t01	Wine grape	nucleus, plastid	28.99	24.02
GSMUA_Achr3P12320_001	Banana	cytosol	27.22	22.77
VIT_10s0042g00170.t01	Wine grape	nucleus	31.95	21.18
VIT_14s0068g01690.t01	Wine grape	nucleus	36.69	20.95
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	39.05	20.75
VIT_15s0048g01150.t01	Wine grape	nucleus	40.24	20.06
GSMUA_Achr5P03320_001	Banana	cytosol	21.89	19.58
VIT_17s0000g06020.t01	Wine grape	nucleus	41.42	19.02
GSMUA_Achr4P27220_001	Banana	nucleus	24.26	18.64
GSMUA_Achr8P00050_001	Banana	cytoskeleton, cytosol, peroxisome	37.28	18.37
GSMUA_Achr11P...	Banana	nucleus	24.26	18.14
HORVU5Hr1G080210.1	Barley	cytosol	28.99	17.95
VIT_01s0026g02200.t01	Wine grape	nucleus	36.69	17.56
Os08t0544800-01	Rice	nucleus	37.28	16.89
Zm00001d031725_P001	Maize	nucleus	34.32	16.57
Zm00001d006165_P001	Maize	nucleus	31.95	16.36
TraesCS5D01G516300.1	Wheat	nucleus	33.14	16.28
EER99208	Sorghum	nucleus	31.36	16.26
TraesCS4A01G355900.1	Wheat	nucleus	28.4	16.22
TraesCS5B01G516200.1	Wheat	cytosol, nucleus, peroxisome	33.14	16.05
OQU80770	Sorghum	nucleus	33.73	15.88
VIT_02s0025g04590.t01	Wine grape	nucleus	38.46	15.82
VIT_18s0117g00340.t01	Wine grape	nucleus	33.14	15.77
TraesCS5A01G309300.1	Wheat	cytosol, nucleus, peroxisome	30.77	15.38
TraesCS5D01G316300.1	Wheat	nucleus	30.18	15.27
TraesCS5B01G310000.1	Wheat	cytosol, nucleus, peroxisome	30.18	15.04
Os09t0521300-00	Rice	nucleus	33.73	14.96
HORVU5Hr1G117990.1	Barley	cytosol, mitochondrion, nucleus	33.14	14.93
VIT_12s0035g00690.t01	Wine grape	nucleus, plastid	34.91	12.83

Protein Annotations

MapMan:15.5.19	ProteinID:CCB49227	ProteinID:CCB49227.1	UniProt:F6HAP5	EMBL:FN595506	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072
PANTHER:PTHR31072:SF70	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0002107EF4	ArrayExpress:VIT_16s0022g02480	EnsemblPlantsGene:VIT_16s0022g02480
EnsemblPlants:VIT_16s0022g02480.t01	unigene:Vvi.22769	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr16:-:15210628..15212056

Molecular Weight (calculated)

17722.9 Da

IEP (calculated)

7.369

GRAVY (calculated)

-0.307

Length

169 amino acids

Sequence
(BLAST)

001: MASPSNPNEE NLSIEKPTTL EISAAFPASS DSVSKSWEAE GEQEISMKTV IALPKKRAVD RHVKVEGRGR RIRMSSDSTA RLFELTRQLG LKSEGETIRW
101: LLKNAEADII RATGSGTIPA IATSVGGTLV VPRVTTGEAA ATTSNAGSGE GLSESCGLAP IYSAAPRGP

Best Arabidopsis Sequence Match ( AT2G45680.1 )
(BLAST)

001: MATIQKLEEV AGKDQTLRAV DLTIINGVRN VETSRPFQVN PTVSLEPKAE PVMPSFSMSL APPSSTGPPL KRASTKDRHT KVEGRGRRIR MPATCAARIF
101: QLTRELGHKS DGETIRWLLE NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDMGE NLMKKKRKRP SNSEYIDISD AVSASSGLAP IATTTTIQPP
201: QALASSTVAQ QLLPQGMYPM WAIPSNAMIP TVGAFFLIPQ IAGPSNQPQL LAFPAAAASP SSYVAAVQQA STMARPPPLQ VVPSSGFVSV SDVSGSNLSR
301: ATSVMAPSSS SGVTTGSSSS IATTTTHTLR DFSLEIYEKQ ELHQFMSTTT ARSSNH

Arabidopsis Description

TCP9Transcription factor TCP9 [Source:UniProtKB/Swiss-Prot;Acc:O64647]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.