Factsheet for VIT_12s0035g00690.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4
endoplasmic reticulum 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g02200.t01	nucleus
VIT_12s0035g00690.t01	nucleus
VIT_17s0000g05090.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G58100.1	VIT_12s0035g00690.t01	AT1G58100.1	23760157
AT1G58100.1	VIT_12s0035g00690.t01	AT1G58100.1	23760157
AT1G58100.1	VIT_01s0026g02200.t01	AT1G69690.1	23760157
AT1G58100.1	VIT_17s0000g05090.t01	AT5G60960.1	21297037

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26343	Soybean	nucleus, plastid	56.52	59.91
VIT_18s0117g00340.t01	Wine grape	nucleus	37.83	49.01
HORVU5Hr1G035980.1	Barley	cytosol	35.0	42.26
AT1G58100.1	Thale cress	nucleus	35.65	40.9
CDY39914	Canola	nucleus, plastid	35.0	40.86
Bra027886.1-P	Field mustard	nucleus, plastid	34.78	40.61
CDY71135	Canola	nucleus	34.35	40.31
Os12t0173300-00	Rice	nucleus	36.52	40.19
VIT_10s0042g00170.t01	Wine grape	nucleus	21.3	38.43
Zm00001d023565_P001	Maize	nucleus	33.7	38.27
TraesCS5A01G121800.1	Wheat	nucleus	34.78	38.19
Os11t0175700-00	Rice	nucleus, plastid	33.48	37.93
TraesCS4B01G093700.1	Wheat	nucleus, plastid	31.09	37.53
HORVU4Hr1G019380.1	Barley	nucleus, plastid	31.3	37.5
TraesCS4D01G090500.1	Wheat	nucleus, plastid	31.3	37.4
TraesCS5B01G117100.1	Wheat	nucleus	33.7	37.17
TraesCS4A01G222700.1	Wheat	nucleus, plastid	31.09	37.14
Zm00001d053020_P001	Maize	cytosol, nucleus, plastid	31.09	36.95
Zm00001d041866_P001	Maize	nucleus	33.26	36.78
VIT_14s0068g01690.t01	Wine grape	nucleus	22.61	35.14
VIT_16s0022g02480.t01	Wine grape	nucleus	12.83	34.91
GSMUA_Achr6P17840_001	Banana	cytosol	29.35	34.79
VIT_08s0040g01600.t01	Wine grape	nucleus, plastid	15.22	34.31
VIT_17s0000g06020.t01	Wine grape	nucleus	26.52	33.15
VIT_01s0026g02200.t01	Wine grape	nucleus	25.22	32.86
Zm00001d004791_P001	Maize	mitochondrion, nucleus	13.91	31.22
VIT_15s0048g01150.t01	Wine grape	nucleus	20.87	28.32
GSMUA_Achr10P...	Banana	nucleus	24.78	28.22
VIT_02s0025g04590.t01	Wine grape	nucleus	20.22	22.63

Protein Annotations

MapMan:15.5.19	EMBL:AM426749	ProteinID:CAN64544	ProteinID:CAN64544.1	ProteinID:CCB55058	ProteinID:CCB55058.1
ncoils:Coil	UniProt:F6HK55	EMBL:FN595990	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR017887	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF1	InterPro:TF_TCP_subgr
InterPro:Transcription_factor_TCP	UniParc:UPI0002108AE9	ArrayExpress:VIT_12s0035g00690	EnsemblPlantsGene:VIT_12s0035g00690	EnsemblPlants:VIT_12s0035g00690.t01	SEG:seg

Description

No Description!

Coordinates

chr12:+:20150532..20152544

Molecular Weight (calculated)

48080.6 Da

IEP (calculated)

7.096

GRAVY (calculated)

-0.668

Length

460 amino acids

Sequence
(BLAST)

001: MDATTSSSSP NSTSSVSGNS SSTTPSPAPP PQLVDASLAI ATRSEADRSR SGGGVVDSTK KNQQQQQQQQ QQQQQQLTIG TNPPAKRSTK DRHTKVDGRG
101: RRIRMPATCA ARVFQLTREL GHKSDGETIE WLLQQAEPAI IAATGTGTIP ANFSTLNVSL RSSGSTISAP PSKSAPHSFH GALALAHHPH YEEGFPHTAM
201: LGFHQQPHLL SADQIGDALP GGGGAGSGGG GSDENYMRKR FRGDLFKDED SNQALENTTT ASEAASGNGN NKTTSLHMGK SPQEQQPGPS GLLRPSNILP
301: ATAMWAVAPA PNSGAGSTFW MLPVTTGAGG PSAAVGASGA GPSEPHMWAL PTAAPTTTGN TLQAPLHFMP RFNLASNLDF QGGRANPLQL GSMLMQQHPS
401: QHLGLGVSET NLGMLAALNA YSRGGLNMNS EQNHPMEHHQ QHPHQPQGTD SGDEDPNSSQ

Best Arabidopsis Sequence Match ( AT1G58100.1 )
(BLAST)

001: MDLSDIRNNN NDTAAVATGG GARQLVDASL SIVPRSTPPE DSTLATTSST ATATTTKRST KDRHTKVDGR GRRIRMPALC AARVFQLTRE LGHKSDGETI
101: EWLLQQAEPA IVAATGTGTI PANFSTLSVS LRSSGSTLSA PPSKSVPLYG ALGLTHHQYD EQGGGGVFAA HTSPLLGFHH QLQHHQNQNQ NQDPVETIPE
201: GENFSRKRYR SVDLSKENDD RKQNENKSLK ESETSGPTAA PMWAVAPPSR SGAGNTFWML PVPTTAGNQM ESSSNNNTAA GHRAPPMWPF VNSAGGGAGG
301: GGGAATHFMA GTGFSFPMDQ YRGSPLQLGS FLAQPQPTQN LGLSMPDSNL GMLAALNSAY SRGGNANANA EQANNAVEHQ EKQQQSDHDD DSREENSNSS
401: E

Arabidopsis Description

TCP8Transcription factor TCP8 [Source:UniProtKB/Swiss-Prot;Acc:Q9C518]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.