Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d004791_P001 | nucleus |
| Zm00001d006822_P001 | |
| Zm00001d023565_P001 | nucleus |
| Zm00001d041866_P001 | nucleus |
| Zm00001d053020_P001 | nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d025896_P001 | Maize | plastid | 21.95 | 21.74 |
| Zm00001d053020_P001 | Maize | cytosol, nucleus, plastid | 40.98 | 21.71 |
| Os11t0175700-00 | Rice | nucleus, plastid | 42.44 | 21.43 |
| Zm00001d018530_P001 | Maize | plastid | 20.0 | 19.81 |
| Zm00001d051216_P001 | Maize | plastid | 20.98 | 19.72 |
| Zm00001d017350_P001 | Maize | plastid | 20.98 | 19.55 |
| GSMUA_Achr6P17840_001 | Banana | cytosol | 36.1 | 19.07 |
| KRH06094 | Soybean | plastid | 32.68 | 18.56 |
| Zm00001d025033_P001 | Maize | plastid | 15.12 | 17.61 |
| CDY71135 | Canola | nucleus | 33.66 | 17.6 |
| Zm00001d023565_P001 | Maize | nucleus | 34.63 | 17.53 |
| Bra027886.1-P | Field mustard | nucleus, plastid | 33.66 | 17.51 |
| GSMUA_Achr10P... | Banana | nucleus | 34.15 | 17.33 |
| Zm00001d041866_P001 | Maize | nucleus | 35.12 | 17.31 |
| CDY39914 | Canola | nucleus, plastid | 33.17 | 17.26 |
| AT1G58100.1 | Thale cress | nucleus | 31.71 | 16.21 |
| Solyc01g103780.2.1 | Tomato | nucleus | 33.66 | 15.51 |
| Zm00001d044836_P001 | Maize | nucleus | 25.85 | 14.85 |
| VIT_12s0035g00690.t01 | Wine grape | nucleus, plastid | 31.22 | 13.91 |
| Zm00001d031725_P001 | Maize | nucleus | 23.41 | 13.71 |
| Zm00001d052256_P001 | Maize | cytosol, nucleus, peroxisome | 25.85 | 13.62 |
| Zm00001d037221_P001 | Maize | cytosol, nucleus, peroxisome | 24.88 | 13.46 |
| PGSC0003DMT400064164 | Potato | nucleus | 34.63 | 13.3 |
| Zm00001d018045_P001 | Maize | cytosol, nucleus, peroxisome | 25.37 | 13.0 |
| Zm00001d011985_P001 | Maize | nucleus | 19.51 | 12.7 |
| Zm00001d042305_P001 | Maize | cytosol, mitochondrion, nucleus | 20.0 | 12.65 |
| Zm00001d006165_P001 | Maize | nucleus | 18.54 | 11.52 |
| Zm00001d031597_P001 | Maize | cytosol, nucleus, plasma membrane, plastid | 12.2 | 9.06 |
| Zm00001d038444_P001 | Maize | nucleus | 12.2 | 8.42 |
| Zm00001d044344_P001 | Maize | nucleus | 12.2 | 8.42 |
Protein Annotations
| EnsemblPlants:Zm00001d004791_P001 | EnsemblPlants:Zm00001d004791_T001 | EnsemblPlantsGene:Zm00001d004791 | InterPro:Transcription_factor_TCP | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF36 |
| PFAM:PF03634 | ProteinID:ONM19595.1 | SEG:seg | UniParc:UPI000842323F | UniProt:A0A1D6EHJ3 | MapMan:15.5.19 |
Description
TCP-transcription factor 41Transcription factor TCP8
Coordinates
chr2:+:139598222..139598940
Molecular Weight (calculated)
21829.4 Da
IEP (calculated)
6.507
GRAVY (calculated)
-0.496
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSLAIAPAA PAVAGGAREV QLAQQQQSAE AHAGAGSSGV TADADKKAVV LALTGELGHK TDGETIEWLL QQAEPAIVAA TGTVTTTTMP ANFSSLAISL
101: RSADASHPSS ASRPAAYHHL LPQQHKVAAM LAWHHHHHQQ LLPPHPQQQQ QAPQDPGVEE FMRKRYREGT DDLFMDPTTR QHHPDDSGGE AEDHKAHVTL
201: AATAM
101: RSADASHPSS ASRPAAYHHL LPQQHKVAAM LAWHHHHHQQ LLPPHPQQQQ QAPQDPGVEE FMRKRYREGT DDLFMDPTTR QHHPDDSGGE AEDHKAHVTL
201: AATAM
001: MDLSDIRNNN NDTAAVATGG GARQLVDASL SIVPRSTPPE DSTLATTSST ATATTTKRST KDRHTKVDGR GRRIRMPALC AARVFQLTRE LGHKSDGETI
101: EWLLQQAEPA IVAATGTGTI PANFSTLSVS LRSSGSTLSA PPSKSVPLYG ALGLTHHQYD EQGGGGVFAA HTSPLLGFHH QLQHHQNQNQ NQDPVETIPE
201: GENFSRKRYR SVDLSKENDD RKQNENKSLK ESETSGPTAA PMWAVAPPSR SGAGNTFWML PVPTTAGNQM ESSSNNNTAA GHRAPPMWPF VNSAGGGAGG
301: GGGAATHFMA GTGFSFPMDQ YRGSPLQLGS FLAQPQPTQN LGLSMPDSNL GMLAALNSAY SRGGNANANA EQANNAVEHQ EKQQQSDHDD DSREENSNSS
401: E
101: EWLLQQAEPA IVAATGTGTI PANFSTLSVS LRSSGSTLSA PPSKSVPLYG ALGLTHHQYD EQGGGGVFAA HTSPLLGFHH QLQHHQNQNQ NQDPVETIPE
201: GENFSRKRYR SVDLSKENDD RKQNENKSLK ESETSGPTAA PMWAVAPPSR SGAGNTFWML PVPTTAGNQM ESSSNNNTAA GHRAPPMWPF VNSAGGGAGG
301: GGGAATHFMA GTGFSFPMDQ YRGSPLQLGS FLAQPQPTQN LGLSMPDSNL GMLAALNSAY SRGGNANANA EQANNAVEHQ EKQQQSDHDD DSREENSNSS
401: E
Arabidopsis Description
TCP8Transcription factor TCP8 [Source:UniProtKB/Swiss-Prot;Acc:Q9C518]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.