CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY01754	nucleus
CDY28576	nucleus
CDY28577	nucleus
CDY39914	nucleus
CDY68276	nucleus
CDY71135	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G58100.1	CDY39914	AT1G58100.1	23760157
AT1G58100.1	CDY71135	AT1G58100.1	23760157
AT1G58100.1	CDY39914	AT1G58100.1	23760157
AT1G58100.1	CDY71135	AT1G58100.1	23760157
AT1G58100.1	CDY01754	AT1G69690.1	23760157
AT1G58100.1	CDY28576	AT1G69690.1	23760157
AT1G58100.1	CDY28577	AT1G69690.1	23760157
AT1G58100.1	CDY68276	AT1G69690.1	23760157

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39914	Canola	nucleus, plastid	97.45	96.95
Bra027886.1-P	Field mustard	nucleus, plastid	97.19	96.7
AT1G58100.1	Thale cress	nucleus	79.85	78.05
HORVU5Hr1G035980.1	Barley	cytosol	41.84	43.04
CDX81094	Canola	nucleus	19.39	42.22
KRH06094	Soybean	plastid	38.78	42.11
CDX78335	Canola	nucleus	18.37	40.91
CDY40752	Canola	cytosol	18.37	40.68
Os12t0173300-00	Rice	nucleus	43.11	40.43
CDY36943	Canola	nucleus	19.39	40.21
CDX87179	Canola	nucleus	21.94	40.0
TraesCS5A01G121800.1	Wheat	nucleus	41.84	39.14
CDY16842	Canola	nucleus	21.43	39.07
Zm00001d023565_P001	Maize	nucleus	40.31	39.01
TraesCS4B01G093700.1	Wheat	nucleus, plastid	37.5	38.58
Zm00001d053020_P001	Maize	cytosol, nucleus, plastid	38.01	38.5
TraesCS4D01G090500.1	Wheat	nucleus, plastid	37.76	38.44
TraesCS4A01G222700.1	Wheat	nucleus, plastid	37.76	38.44
Zm00001d041866_P001	Maize	nucleus	40.56	38.22
TraesCS5B01G117100.1	Wheat	nucleus	40.56	38.13
HORVU4Hr1G019380.1	Barley	nucleus, plastid	36.99	37.76
CDY44770	Canola	cytosol	20.66	36.0
CDY45760	Canola	nucleus	22.19	35.95
Os11t0175700-00	Rice	nucleus, plastid	36.73	35.47
CDY46951	Canola	nucleus	20.66	35.22
CDY28577	Canola	cytosol	21.68	34.98
CDX88010	Canola	nucleus	22.45	34.78
CDY21536	Canola	nucleus	20.92	34.75
VIT_12s0035g00690.t01	Wine grape	nucleus, plastid	40.31	34.35
CDY40799	Canola	nucleus	20.15	34.35
CDY28576	Canola	nucleus	27.55	33.96
Zm00001d004791_P001	Maize	mitochondrion, nucleus	17.6	33.66
CDY01754	Canola	nucleus, plastid	27.04	32.82
CDY68276	Canola	nucleus, plastid	26.79	32.71
CDY24170	Canola	nucleus	20.15	32.51
CDY60249	Canola	cytosol	16.84	31.73
CDY20065	Canola	cytosol	20.41	29.74
CDY48964	Canola	nucleus	16.33	29.09
CDY52403	Canola	nucleus	22.45	28.85
CDY00171	Canola	nucleus	20.15	28.62
CDY13675	Canola	nucleus	22.45	28.3
CDY27099	Canola	nucleus	19.64	27.6
CDX72856	Canola	nucleus	23.21	27.25
CDX91612	Canola	nucleus	19.9	27.08
CDX95656	Canola	nucleus	19.9	26.62
CDX96370	Canola	nucleus	22.7	26.57
GSMUA_Achr6P17840_001	Banana	cytosol	26.02	26.29
CDY53888	Canola	nucleus	20.66	26.05
CDX82193	Canola	nucleus, plastid	22.96	25.57
CDY03666	Canola	nucleus, plastid	22.96	25.35
GSMUA_Achr10P...	Banana	nucleus	26.02	25.25
CDX74756	Canola	nucleus	20.92	25.23
CDY18910	Canola	nucleus	20.66	24.92

Protein Annotations

MapMan:15.5.19	UniProt:A0A078JXH1	EnsemblPlants:CDY71135	ProteinID:CDY71135	ProteinID:CDY71135.1	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00011585001	InterPro:IPR017887	PFAM:PF03634
PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF64	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0004EE5C0E
SEG:seg	:	:	:	:	:

Description

BnaCnng71510DBnaCnng71510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JXH1]

Coordinates

chrLK044610:-:1485..2663

Molecular Weight (calculated)

41130.3 Da

IEP (calculated)

6.512

GRAVY (calculated)

-0.677

Length

392 amino acids

Sequence
(BLAST)

001: MDLSDDGAAA RGGSRHLVDP SLSIVPRSTP QEDPTTSSTA AAAATTSGVV TKRSSKDRHT KVDGRGRRIR MPALCAARVF QLTRELGHKS DGETIEWLLQ
101: QAEPAIVAAT GTGTIPANFS SLSVSLRSSG STLSAPPSKS VPLYGALGLT HHQYEEQGGA FGAHTPPLLG FHHHLQQQHH QQAPAETIPG PDGESFSRKR
201: YRSVDSSKED GEGKQNENKS LKESEPPAAA TGAPMWAVAP TNRSAGGNTF WMLPVPTTTA GNQPAAMESS SNANRAHMWP FGGGGAGAGG GGATHFMAGT
301: GFSFPMDQYR GSPLQLGSFL AQPQQPNQNI GLSLPDSNLG VLAALNAAYP RGGNANAEQV NNAVEHQEKQ QQQAQQSDQD DDSRDENSNS DG

Best Arabidopsis Sequence Match ( AT1G58100.1 )
(BLAST)

001: MDLSDIRNNN NDTAAVATGG GARQLVDASL SIVPRSTPPE DSTLATTSST ATATTTKRST KDRHTKVDGR GRRIRMPALC AARVFQLTRE LGHKSDGETI
101: EWLLQQAEPA IVAATGTGTI PANFSTLSVS LRSSGSTLSA PPSKSVPLYG ALGLTHHQYD EQGGGGVFAA HTSPLLGFHH QLQHHQNQNQ NQDPVETIPE
201: GENFSRKRYR SVDLSKENDD RKQNENKSLK ESETSGPTAA PMWAVAPPSR SGAGNTFWML PVPTTAGNQM ESSSNNNTAA GHRAPPMWPF VNSAGGGAGG
301: GGGAATHFMA GTGFSFPMDQ YRGSPLQLGS FLAQPQPTQN LGLSMPDSNL GMLAALNSAY SRGGNANANA EQANNAVEHQ EKQQQSDHDD DSREENSNSS
401: E

Arabidopsis Description

TCP8Transcription factor TCP8 [Source:UniProtKB/Swiss-Prot;Acc:Q9C518]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.