Subcellular Localization
min:
: max
Winner_takes_all: nucleus, plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- cytosol 1
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY03666 | Canola | nucleus, plastid | 98.86 | 98.03 |
Bra008001.1-P | Field mustard | nucleus, plastid | 98.58 | 92.78 |
AT1G72010.1 | Thale cress | nucleus, plastid | 84.94 | 79.73 |
CDX96370 | Canola | nucleus | 75.85 | 79.7 |
CDX72856 | Canola | nucleus | 74.43 | 78.44 |
CDX87179 | Canola | nucleus | 26.7 | 43.72 |
CDY40752 | Canola | cytosol | 21.88 | 43.5 |
CDY16842 | Canola | nucleus | 26.42 | 43.26 |
CDX78335 | Canola | nucleus | 20.74 | 41.48 |
CDX81094 | Canola | nucleus | 21.02 | 41.11 |
CDY44770 | Canola | cytosol | 25.85 | 40.44 |
CDY45760 | Canola | nucleus | 26.7 | 38.84 |
CDY46951 | Canola | nucleus | 25.28 | 38.7 |
CDY36943 | Canola | nucleus | 20.74 | 38.62 |
CDY40799 | Canola | nucleus | 25.0 | 38.26 |
CDY21536 | Canola | nucleus | 25.28 | 37.71 |
CDX88010 | Canola | nucleus | 26.14 | 36.36 |
CDY24170 | Canola | nucleus | 21.02 | 30.45 |
CDY01754 | Canola | nucleus, plastid | 26.7 | 29.1 |
CDY68276 | Canola | nucleus, plastid | 26.42 | 28.97 |
CDY28576 | Canola | nucleus | 26.14 | 28.93 |
CDY28577 | Canola | cytosol | 19.89 | 28.81 |
CDY60249 | Canola | cytosol | 16.48 | 27.88 |
CDY27099 | Canola | nucleus | 21.59 | 27.24 |
CDX91612 | Canola | nucleus | 21.59 | 26.39 |
CDX95656 | Canola | nucleus | 21.59 | 25.94 |
CDY48964 | Canola | nucleus | 15.91 | 25.45 |
VIT_18s0117g00340.t01 | Wine grape | nucleus | 25.0 | 24.79 |
CDX74756 | Canola | nucleus | 22.73 | 24.62 |
CDY53888 | Canola | nucleus | 21.59 | 24.44 |
CDY18910 | Canola | nucleus | 22.16 | 24.0 |
CDY20065 | Canola | cytosol | 18.18 | 23.79 |
CDY52403 | Canola | nucleus | 20.45 | 23.61 |
CDY00171 | Canola | nucleus | 18.47 | 23.55 |
CDY71135 | Canola | nucleus | 25.57 | 22.96 |
CDY39914 | Canola | nucleus, plastid | 25.28 | 22.59 |
CDY13675 | Canola | nucleus | 19.89 | 22.51 |
Solyc01g103780.2.1 | Tomato | nucleus | 26.99 | 21.35 |
GSMUA_Achr6P17840_001 | Banana | cytosol | 22.73 | 20.62 |
PGSC0003DMT400064164 | Potato | nucleus | 29.26 | 19.29 |
GSMUA_Achr10P... | Banana | nucleus | 21.02 | 18.32 |
Protein Annotations
EnsemblPlants:CDX82193 | EnsemblPlantsGene:GSBRNA2T00137276001 | InterPro:IPR017887 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | ncoils:Coil |
PANTHER:PTHR31072 | PANTHER:PTHR31072:SF70 | PFAM:PF03634 | PFscan:PS51369 | ProteinID:CDX82193 | ProteinID:CDX82193.1 |
SEG:seg | UniParc:UPI0004EE679A | MapMan:15.5.19 | : | : | : |
Description
BnaC02g20970D
Coordinates
chrLK031827:-:1851875..1853198
Molecular Weight (calculated)
37088.4 Da
IEP (calculated)
9.001
GRAVY (calculated)
-0.679
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQNSHDRPT AEAGLQLNST ENPSPGRSVP FAGGATSSST STSSGTALAV VKPAAKKPSK DRHTKVDGRG RRIRMPALCA ARVFQLTREL GHKSDGETIE
101: WLLQQAEPAI IASTGTGTIP ANFSTLNATL RGGGGSTIFA QSSKSSPFHS TGMSLYEDTA QNAAVFGFHH QGYPPIMSAE RNQPTLGKPY REDYFKESEP
201: SGSSQKPGQF QEQEMGPGPG MGRGTANVVP QPMWAVAPGT TNGGSAFWML PMSGSGGREQ MQQQPGHQMW AFNQGSYPVG TGRVVTAPMG SMMLGGQQLG
301: LGVAEGNMAA AMRGSRGGGG DGLAMTLDQH QHQHHQQHQE PNQSQASGDD KK
101: WLLQQAEPAI IASTGTGTIP ANFSTLNATL RGGGGSTIFA QSSKSSPFHS TGMSLYEDTA QNAAVFGFHH QGYPPIMSAE RNQPTLGKPY REDYFKESEP
201: SGSSQKPGQF QEQEMGPGPG MGRGTANVVP QPMWAVAPGT TNGGSAFWML PMSGSGGREQ MQQQPGHQMW AFNQGSYPVG TGRVVTAPMG SMMLGGQQLG
301: LGVAEGNMAA AMRGSRGGGG DGLAMTLDQH QHQHHQQHQE PNQSQASGDD KK
001: MNQNSSVAEA TLQLNSGEKP SPGSIPFISS GQHGNISTSA TSSTSTSSGS ALAVVKSAVK KPTKDRHTKV DGRGRRIRMP AMCAARVFQL TRELGHKSDG
101: ETIEWLLQQA EPAIIASTGT GTIPANFSTL NASLRSGGGS TLFSQASKSS SSPLSFHSTG MSLYEDNNGT NGSSVDPSRK LLNSAANAAV FGFHHQMYPP
201: IMSTERNPNT LVKPYREDYF KEPSSAAEPS ESSQKASQFQ EQELAQGRGT ANVVPQPMWA VAPGTTNGGS AFWMLPMSGS GGREQMQQQP GHQMWAFNPG
301: NYPVGTGRVV TAPMGSMMLG GQQLGLGVAE GNMAAAMRGS RGDGLAMTLD QHQHQLQHQE PNQSQASENG GDDKK
101: ETIEWLLQQA EPAIIASTGT GTIPANFSTL NASLRSGGGS TLFSQASKSS SSPLSFHSTG MSLYEDNNGT NGSSVDPSRK LLNSAANAAV FGFHHQMYPP
201: IMSTERNPNT LVKPYREDYF KEPSSAAEPS ESSQKASQFQ EQELAQGRGT ANVVPQPMWA VAPGTTNGGS AFWMLPMSGS GGREQMQQQP GHQMWAFNPG
301: NYPVGTGRVV TAPMGSMMLG GQQLGLGVAE GNMAAAMRGS RGDGLAMTLD QHQHQLQHQE PNQSQASENG GDDKK
Arabidopsis Description
TCP22Transcription factor TCP22 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7G4]
SUBAcon: [nucleus,plastid]
SUBAcon: [nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.