Factsheet for Solyc01g103780.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064164	Potato	nucleus	90.11	75.09
Solyc02g094290.1.1	Tomato	cytosol	14.61	57.52
KRH06094	Soybean	plastid	40.0	49.31
KRH26343	Soybean	nucleus, plastid	43.37	44.47
VIT_18s0117g00340.t01	Wine grape	nucleus	32.58	40.85
Solyc06g065190.1.1	Tomato	nucleus	27.64	37.85
Solyc11g020670.1.1	Tomato	nucleus	31.69	37.7
HORVU5Hr1G035980.1	Barley	cytosol	30.34	35.43
Zm00001d053020_P001	Maize	cytosol, nucleus, plastid	30.79	35.4
Solyc01g008230.2.1	Tomato	nucleus	19.78	35.34
HORVU4Hr1G019380.1	Barley	nucleus, plastid	30.11	34.9
TraesCS4B01G093700.1	Wheat	nucleus, plastid	29.44	34.38
TraesCS4D01G090500.1	Wheat	nucleus, plastid	29.66	34.29
Os12t0173300-00	Rice	nucleus	32.13	34.21
TraesCS4A01G222700.1	Wheat	nucleus, plastid	29.44	34.03
Solyc04g009180.1.1	Tomato	nucleus	20.22	33.83
Os11t0175700-00	Rice	nucleus, plastid	30.79	33.74
Zm00001d004791_P001	Maize	mitochondrion, nucleus	15.51	33.66
TraesCS5A01G121800.1	Wheat	nucleus	30.79	32.7
Zm00001d023565_P001	Maize	nucleus	29.44	32.35
Zm00001d041866_P001	Maize	nucleus	29.89	31.97
Solyc09g008030.1.1	Tomato	plastid	14.38	31.84
TraesCS5B01G117100.1	Wheat	nucleus	29.66	31.65
Solyc02g068200.1.1	Tomato	nucleus	17.98	29.41
Solyc05g007420.1.1	Tomato	nucleus	25.17	29.24
GSMUA_Achr10P...	Banana	nucleus	26.52	29.21
Solyc03g116320.2.1	Tomato	nucleus	26.52	28.85
Solyc06g070900.2.1	Tomato	nucleus	26.74	28.61
CDX72856	Canola	nucleus	21.35	28.44
CDX96370	Canola	nucleus	20.45	27.16
CDX82193	Canola	nucleus, plastid	21.35	26.99
CDY03666	Canola	nucleus, plastid	21.35	26.76
AT1G72010.1	Thale cress	nucleus, plastid	22.47	26.67
GSMUA_Achr6P17840_001	Banana	cytosol	23.15	26.55
Bra016090.1-P	Field mustard	nucleus	21.12	26.4
Solyc03g006800.1.1	Tomato	nucleus	18.88	25.77
Bra008001.1-P	Field mustard	nucleus, plastid	21.57	25.67
Solyc08g080150.1.1	Tomato	nucleus	16.18	19.46

Protein Annotations

MapMan:15.5.19	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	UniProt:K4B1V3
PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF64	EnsemblPlantsGene:Solyc01g103780.2	EnsemblPlants:Solyc01g103780.2.1
InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI00027685E9	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:-:92303708..92305335

Molecular Weight (calculated)

47553.3 Da

IEP (calculated)

9.420

GRAVY (calculated)

-0.713

Length

445 amino acids

Sequence
(BLAST)

001: MELTDLQNNN TNSNSKQQTT TNNTTPSPPL HHQQQHQYQL LSQHHHHQQQ QQLQQQHGRS SVPFMTSISI QPNAQAPITN SATNASPSTS SPTPPQPPHL
101: VDASLAIATR SDTLVDPNKK SQLAIQQTQP VQPQQPPPKR QTKDRHTKVD GRGRRIRMPA ACAARVFQLT RELGHKSDGE TIEWLLQQAE PAIIAATGTG
201: TIPANFSTLN ISLRSSGSTL SAPPSKSAPH SFHSALALAA AHQTPHPFEE GFSQMLGFHH YTHLLTQNPI AESIPGGGGG GGSSGDGGGV GGQEGADNYL
301: RKRYREDLFK EEGSSNQQGE ASGGSSSPSN KQFKGNSPQL PNKPNSQEGV AGPSSNMLRH TNVIPATGLW AVAPPPTSGT TGGSPFWMLP VTSGQTLSAP
401: MASTSGTTTL ESQMWPFPMG SSNTPLHFIN NNHLNILGLE WPKLI

Best Arabidopsis Sequence Match ( AT1G58100.1 )
(BLAST)

001: MDLSDIRNNN NDTAAVATGG GARQLVDASL SIVPRSTPPE DSTLATTSST ATATTTKRST KDRHTKVDGR GRRIRMPALC AARVFQLTRE LGHKSDGETI
101: EWLLQQAEPA IVAATGTGTI PANFSTLSVS LRSSGSTLSA PPSKSVPLYG ALGLTHHQYD EQGGGGVFAA HTSPLLGFHH QLQHHQNQNQ NQDPVETIPE
201: GENFSRKRYR SVDLSKENDD RKQNENKSLK ESETSGPTAA PMWAVAPPSR SGAGNTFWML PVPTTAGNQM ESSSNNNTAA GHRAPPMWPF VNSAGGGAGG
301: GGGAATHFMA GTGFSFPMDQ YRGSPLQLGS FLAQPQPTQN LGLSMPDSNL GMLAALNSAY SRGGNANANA EQANNAVEHQ EKQQQSDHDD DSREENSNSS
401: E

Arabidopsis Description

TCP8Transcription factor TCP8 [Source:UniProtKB/Swiss-Prot;Acc:Q9C518]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.