Factsheet for Os12t0173300-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os07t0603900-01
Os11t0175700-00	nucleus
Os12t0173300-00	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G58100.1	Os11t0175700-00	AT1G58100.1	23760157
AT1G58100.1	Os12t0173300-00	AT1G58100.1	23760157
AT1G58100.1	Os11t0175700-00	AT1G58100.1	23760157
AT1G58100.1	Os12t0173300-00	AT1G58100.1	23760157
AT1G58100.1	Os07t0603900-01	AT5G60960.1	21297037

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023565_P001	Maize	nucleus	69.14	71.36
HORVU5Hr1G035980.1	Barley	cytosol	64.83	71.13
TraesCS5A01G121800.1	Wheat	nucleus	68.66	68.5
TraesCS5B01G117100.1	Wheat	nucleus	67.22	67.39
Zm00001d041866_P001	Maize	nucleus	66.03	66.35
Os11t0175700-00	Rice	nucleus, plastid	48.8	50.25
Os03t0422702-00	Rice	cytosol, plastid	14.83	49.21
KRH06094	Soybean	plastid	38.04	44.04
CDY71135	Canola	nucleus	40.43	43.11
AT1G58100.1	Thale cress	nucleus	41.15	42.89
Os02t0828566-01	Rice	nucleus	24.16	42.8
CDY39914	Canola	nucleus, plastid	40.19	42.64
Bra027886.1-P	Field mustard	nucleus, plastid	39.95	42.39
Os02t0635800-01	Rice	nucleus	19.86	39.34
Os04t0542302-00	Rice	cytosol, mitochondrion, nucleus	17.46	38.42
Os04t0526000-01	Rice	plastid	18.18	36.89
VIT_12s0035g00690.t01	Wine grape	nucleus, plastid	40.19	36.52
PGSC0003DMT400064164	Potato	nucleus	42.11	32.96
Solyc01g103780.2.1	Tomato	nucleus	34.21	32.13
Os04t0194600-01	Rice	plastid	13.4	31.82
Os06t0226700-01	Rice	nucleus	28.95	31.27
Os01t0924400-01	Rice	nucleus	22.49	29.65
GSMUA_Achr6P17840_001	Banana	cytosol	27.51	29.64
Os02t0747400-01	Rice	nucleus	28.95	29.51
GSMUA_Achr10P...	Banana	nucleus	27.03	27.97
Os08t0544800-01	Rice	nucleus	22.25	24.93
Os09t0521300-00	Rice	nucleus	18.9	20.73

Protein Annotations

MapMan:15.5.19	EntrezGene:9271589	ProteinID:ABA96580.1	ProteinID:BAH95539.1	ProteinID:BAT16083.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	EnsemblPlantsGene:Os12g0173300	EnsemblPlants:Os12t0173300-00	PFAM:PF03634
PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF36	UniProt:Q2QX18	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP
UniParc:UPI0000681961	RefSeq:XP_015618822.1	SEG:seg	:	:	:

Description

TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 28Transcription factor, TCP domain containing protein. (Os12t0173300-00)

Coordinates

chr12:+:3709508..3711528

Molecular Weight (calculated)

42528.7 Da

IEP (calculated)

6.184

GRAVY (calculated)

-0.622

Length

418 amino acids

Sequence
(BLAST)

001: MDHGGGGGGG GAAPSSSNIG GGSGGGGGGG GRENHPHHPF YYSGPAAAAA AAAAAQQQQQ TFMGALAITP VVAEQPQGSS GGGEKKVVAP TTPAAAGAAA
101: TTTLAKRPSK DRHTKVDGRG RRIRMPALCA ARVFQLTREL GHKSDGETIE WLLQQAEPAI IAATGTGTIP ANFSSLNISI RSGAASASSA SNPNRASPFP
201: ALALHPHHQQ HDVSAMLGYH HHLLPPPQQQ QESPQDPGGA GAFMRKRYRE DLFKEDDDRQ DPSAPKAREQ QPTTPQAAAA AAAAAAMWAV APNTAAPGGA
301: FWMLPVSASS AAAARPTEQP MWSFAGGGGG AATVQAPLQF MSTRVNYPGS AGAGMSDTNL GMLAALNAYN RGGAGDQQPQ QQPEMDQQGR NDDDDDDGDD
401: SGDEDNGGAN NNNNNSSQ

Best Arabidopsis Sequence Match ( AT1G58100.1 )
(BLAST)

001: MDLSDIRNNN NDTAAVATGG GARQLVDASL SIVPRSTPPE DSTLATTSST ATATTTKRST KDRHTKVDGR GRRIRMPALC AARVFQLTRE LGHKSDGETI
101: EWLLQQAEPA IVAATGTGTI PANFSTLSVS LRSSGSTLSA PPSKSVPLYG ALGLTHHQYD EQGGGGVFAA HTSPLLGFHH QLQHHQNQNQ NQDPVETIPE
201: GENFSRKRYR SVDLSKENDD RKQNENKSLK ESETSGPTAA PMWAVAPPSR SGAGNTFWML PVPTTAGNQM ESSSNNNTAA GHRAPPMWPF VNSAGGGAGG
301: GGGAATHFMA GTGFSFPMDQ YRGSPLQLGS FLAQPQPTQN LGLSMPDSNL GMLAALNSAY SRGGNANANA EQANNAVEHQ EKQQQSDHDD DSREENSNSS
401: E

Arabidopsis Description

TCP8Transcription factor TCP8 [Source:UniProtKB/Swiss-Prot;Acc:Q9C518]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.