Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G090640.1 | Barley | plastid | 78.16 | 79.7 |
| TraesCS2A01G376000.1 | Wheat | plastid | 78.64 | 79.02 |
| TraesCS2D01G372200.1 | Wheat | plastid | 78.16 | 78.54 |
| Zm00001d025896_P001 | Maize | plastid | 71.84 | 71.5 |
| EES11145 | Sorghum | plastid | 71.36 | 71.01 |
| TraesCS2B01G392900.1 | Wheat | cytosol | 77.18 | 63.35 |
| Os02t0635800-01 | Rice | nucleus | 64.08 | 62.56 |
| Os03t0422702-00 | Rice | cytosol, plastid | 33.98 | 55.56 |
| Os02t0828566-01 | Rice | nucleus | 47.09 | 41.1 |
| Os04t0194600-01 | Rice | plastid | 27.67 | 32.39 |
| Os04t0542302-00 | Rice | cytosol, mitochondrion, nucleus | 29.61 | 32.11 |
| GSMUA_Achr2P10690_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 24.27 | 23.7 |
| Os01t0924400-01 | Rice | nucleus | 29.61 | 19.24 |
| Os08t0544800-01 | Rice | nucleus | 33.98 | 18.77 |
| Os11t0175700-00 | Rice | nucleus, plastid | 36.41 | 18.47 |
| Os12t0173300-00 | Rice | nucleus | 36.89 | 18.18 |
| Os06t0226700-01 | Rice | nucleus | 33.01 | 17.57 |
| Os02t0747400-01 | Rice | nucleus | 34.47 | 17.32 |
| Os09t0521300-00 | Rice | nucleus | 31.07 | 16.8 |
Protein Annotations
| MapMan:15.5.19 | EntrezGene:4336452 | ProteinID:BAF15275.1 | ProteinID:BAS90167.1 | ProteinID:CAE05645.2 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR017887 | EnsemblPlantsGene:Os04g0526000 | EnsemblPlants:Os04t0526000-01 | PFAM:PF03634 |
| PFscan:PS51369 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF31 | UniProt:Q7XKJ6 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP |
| UniParc:UPI00001B1AD7 | RefSeq:XP_015635777.1 | SEG:seg | : | : | : |
Description
TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 17Similar to Auxin-induced basic helix-loop-helix transcription factor. (Os04t0526000-01)
Coordinates
chr4:+:26310603..26311543
Molecular Weight (calculated)
21986.1 Da
IEP (calculated)
10.919
GRAVY (calculated)
-0.289
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRDAATFQ VYRPMAMPTP AALPPSSQQI TMPFTAALVD AVLPAPRKAA ATQGGKDRHS KVNGRGRRVR MPIVCAARVF QLTRELGLKS DGQTIEWLLR
101: QAEPSILAAT GSGTTPAVFS CSSAPSTASS SFLLGKRPRQ EDHEAPTFWE ALQQQPRPAV SSWGALVSPS QEAQAYASSV AQVHHLNLLS ALSGAATRRP
201: AQEESR
101: QAEPSILAAT GSGTTPAVFS CSSAPSTASS SFLLGKRPRQ EDHEAPTFWE ALQQQPRPAV SSWGALVSPS QEAQAYASSV AQVHHLNLLS ALSGAATRRP
201: AQEESR
001: MADNDGAVSN GIIVEQTSNK GPLNAVKKPP SKDRHSKVDG RGRRIRMPII CAARVFQLTR ELGHKSDGQT IEWLLRQAEP SIIAATGTGT TPASFSTASL
101: STSSPFTLGK RVVRAEEGES GGGGGGGLTV GHTMGTSLMG GGGSGGFWAV PARPDFGQVW SFATGAPPEM VFAQQQQPAT LFVRHQQQQQ ASAAAAAAMG
201: EASAARVGNY LPGHHLNLLA SLSGGANGSG RREDDHEPR
101: STSSPFTLGK RVVRAEEGES GGGGGGGLTV GHTMGTSLMG GGGSGGFWAV PARPDFGQVW SFATGAPPEM VFAQQQQPAT LFVRHQQQQQ ASAAAAAAMG
201: EASAARVGNY LPGHHLNLLA SLSGGANGSG RREDDHEPR
Arabidopsis Description
TCP21Transcription factor TCP21 [Source:UniProtKB/Swiss-Prot;Acc:Q9FTA2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.