Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G376000.1 | Wheat | plastid | 78.88 | 96.59 |
| TraesCS2D01G372200.1 | Wheat | plastid | 78.49 | 96.1 |
| HORVU2Hr1G090640.1 | Barley | plastid | 76.89 | 95.54 |
| Os04t0526000-01 | Rice | plastid | 63.35 | 77.18 |
| Zm00001d025896_P001 | Maize | plastid | 60.16 | 72.95 |
| EES11145 | Sorghum | plastid | 58.96 | 71.5 |
| TraesCS6B01G262600.1 | Wheat | plastid | 47.81 | 60.3 |
| TraesCS6B01G462100.1 | Wheat | mitochondrion | 29.08 | 36.87 |
| TraesCS2B01G062900.1 | Wheat | plastid | 22.31 | 35.0 |
| GSMUA_Achr2P10690_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 19.52 | 23.22 |
| TraesCS4B01G093700.1 | Wheat | nucleus, plastid | 30.28 | 19.95 |
| TraesCS5B01G516200.1 | Wheat | cytosol, nucleus, peroxisome | 25.5 | 18.34 |
| TraesCS5B01G117100.1 | Wheat | nucleus | 29.08 | 17.51 |
| TraesCS7B01G091900.1 | Wheat | cytosol, nucleus, peroxisome | 25.5 | 17.2 |
| TraesCS5B01G310000.1 | Wheat | cytosol, nucleus, peroxisome | 23.11 | 17.11 |
| TraesCS3B01G470700.1 | Wheat | nucleus | 23.51 | 16.91 |
| TraesCS6B01G334900.1 | Wheat | nucleus | 26.29 | 16.42 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G392900.1 | EnsemblPlantsGene:TraesCS2B01G392900 | InterPro:IPR017887 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF31 | PFAM:PF03634 | PFscan:PS51369 | SEG:seg | MapMan:15.5.19 | : |
Description
No Description!
Coordinates
chr2B:-:557227220..557227975
Molecular Weight (calculated)
26987.2 Da
IEP (calculated)
10.549
GRAVY (calculated)
-0.386
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLQPLYKFA PHRVRDQADK ALSIHPSPSD HLPTHLCATR TKAKPPAAMA SRDAATFQLY RPMAMPTATL MPQTMAMPGF SSAEAADDAV VRVPAPRTAG
101: AAKGAKDRHS KVNGRGRRVR MPIVCAARVF QLTRELGLKS DGQTVEWLLR QAEPSILAAT GSGTTPAVFS CSSAPSTAAV SLLGKRPRED HEHEAAPSFW
201: EALQARPVPW GLSPSLEAQA YASSVAQGHH HHLNLLSALS GASRRPEEES R
101: AAKGAKDRHS KVNGRGRRVR MPIVCAARVF QLTRELGLKS DGQTVEWLLR QAEPSILAAT GSGTTPAVFS CSSAPSTAAV SLLGKRPRED HEHEAAPSFW
201: EALQARPVPW GLSPSLEAQA YASSVAQGHH HHLNLLSALS GASRRPEEES R
001: MSINNNNNNN NNNNDGLMIS SNGALIEQQP SVVVKKPPAK DRHSKVDGRG RRIRMPIICA ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP
101: ASFSTASVSI RGATNSTSLD HKPTSLLGGT SPFILGKRVR ADEDSNNSHN HSSVGKDETF TTTPAGFWAV PARPDFGQVW SFAGAPQEMF LQQQHHHQQP
201: LFVHQQQQQQ AAMGEASAAR VGNYLPGHLN LLASLSGGSP GSDRREEDPR
101: ASFSTASVSI RGATNSTSLD HKPTSLLGGT SPFILGKRVR ADEDSNNSHN HSSVGKDETF TTTPAGFWAV PARPDFGQVW SFAGAPQEMF LQQQHHHQQP
201: LFVHQQQQQQ AAMGEASAAR VGNYLPGHLN LLASLSGGSP GSDRREEDPR
Arabidopsis Description
TCP7Transcription factor TCP7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMX2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.