Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G316300.1 | Wheat | nucleus | 95.87 | 97.31 |
| TraesCS5A01G309300.1 | Wheat | cytosol, nucleus, peroxisome | 91.45 | 91.72 |
| Zm00001d006165_P001 | Maize | nucleus | 58.7 | 60.3 |
| EER99208 | Sorghum | nucleus | 57.82 | 60.12 |
| HORVU5Hr1G080210.1 | Barley | cytosol | 39.82 | 49.45 |
| Os09t0521300-00 | Rice | nucleus | 54.87 | 48.82 |
| TraesCS2B01G062900.1 | Wheat | plastid | 15.63 | 33.12 |
| TraesCS6B01G262600.1 | Wheat | plastid | 17.99 | 30.65 |
| VIT_16s0022g02480.t01 | Wine grape | nucleus | 15.04 | 30.18 |
| TraesCS5B01G516200.1 | Wheat | cytosol, nucleus, peroxisome | 28.91 | 28.08 |
| CDY27099 | Canola | nucleus | 22.42 | 27.24 |
| GSMUA_Achr3P12320_001 | Banana | cytosol | 16.22 | 27.23 |
| CDX91612 | Canola | nucleus | 22.12 | 26.04 |
| Bra022568.1-P | Field mustard | cytosol | 22.71 | 25.93 |
| AT5G51910.1 | Thale cress | nucleus | 22.12 | 25.6 |
| TraesCS6B01G462100.1 | Wheat | mitochondrion | 14.75 | 25.25 |
| KRH35393 | Soybean | nucleus | 21.83 | 23.79 |
| TraesCS6B01G334900.1 | Wheat | nucleus | 28.02 | 23.63 |
| KRG91429 | Soybean | nucleus | 22.42 | 23.31 |
| CDX95656 | Canola | nucleus | 20.06 | 23.21 |
| TraesCS2B01G392900.1 | Wheat | cytosol | 17.11 | 23.11 |
| Bra000395.1-P | Field mustard | nucleus | 20.65 | 22.51 |
| CDY53888 | Canola | nucleus | 20.65 | 22.51 |
| VIT_15s0048g01150.t01 | Wine grape | nucleus | 21.83 | 21.83 |
| TraesCS7B01G091900.1 | Wheat | cytosol, nucleus, peroxisome | 23.89 | 21.77 |
| TraesCS4B01G093700.1 | Wheat | nucleus, plastid | 24.19 | 21.52 |
| Solyc03g006800.1.1 | Tomato | nucleus | 20.65 | 21.47 |
| PGSC0003DMT400088049 | Potato | cytosol | 16.81 | 21.11 |
| KRH57263 | Soybean | nucleus | 21.53 | 21.1 |
| Bra004929.1-P | Field mustard | nucleus | 20.06 | 20.99 |
| CDX74756 | Canola | nucleus | 20.06 | 20.92 |
| KRH48289 | Soybean | nucleus | 20.65 | 20.9 |
| KRH03994 | Soybean | nucleus | 20.94 | 20.88 |
| KRH65181 | Soybean | nucleus | 20.65 | 20.83 |
| PGSC0003DMT400094424 | Potato | cytosol | 15.04 | 20.82 |
| CDY18910 | Canola | nucleus | 19.76 | 20.62 |
| TraesCS3B01G470700.1 | Wheat | nucleus | 20.94 | 20.34 |
| PGSC0003DMT400062327 | Potato | nucleus | 21.83 | 20.22 |
| AT2G45680.1 | Thale cress | cytosol | 20.35 | 19.38 |
| TraesCS5B01G117100.1 | Wheat | nucleus | 22.42 | 18.23 |
| Solyc08g080150.1.1 | Tomato | nucleus | 19.17 | 17.57 |
| VIT_02s0025g04590.t01 | Wine grape | nucleus | 21.24 | 17.52 |
| PGSC0003DMT400058534 | Potato | nucleus | 18.88 | 17.11 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G310000.1 | EnsemblPlantsGene:TraesCS5B01G310000 | InterPro:IPR017887 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | ncoils:Coil |
| PANTHER:PTHR31072 | PANTHER:PTHR31072:SF19 | PFAM:PF03634 | PFscan:PS51369 | SEG:seg | MapMan:15.5.19 |
Description
No Description!
Coordinates
chr5B:-:491994033..491995052
Molecular Weight (calculated)
34591.2 Da
IEP (calculated)
4.742
GRAVY (calculated)
-0.317
Length
339 amino acids
Sequence
(BLAST)
(BLAST)
001: MESQLQGNGE QATDARYHDA ASAAPASNAP LAIAVVPAAA HGPIVPKPEQ APGEFLGGLA VALPPRNRDR HTKVEGRGRR IRMAAPCAAR VAQLTRELGH
101: KTDGDTIRWL LQQSEPAIVA ATGTGTVPAI ATTVDGVLRI PTESPSAAGA DGAGPASKRR KLQPTRAAGG AGPLVAAPPA AYYPVAADPL LQGNGGGGAI
201: SVSSGLAPVS AAAAPAGGHI PFFALQVPAS GDGKQMVPQA AMWMVQQPPA AGGAPNHPTH YWAFQSNPAE FNNFPGAQAI NVANYQQQPC YSPMQFVAAG
301: GEPQDQQEAG DQCADADDQI QGLEDDYDGE ALTDSSSEE
101: KTDGDTIRWL LQQSEPAIVA ATGTGTVPAI ATTVDGVLRI PTESPSAAGA DGAGPASKRR KLQPTRAAGG AGPLVAAPPA AYYPVAADPL LQGNGGGGAI
201: SVSSGLAPVS AAAAPAGGHI PFFALQVPAS GDGKQMVPQA AMWMVQQPPA AGGAPNHPTH YWAFQSNPAE FNNFPGAQAI NVANYQQQPC YSPMQFVAAG
301: GEPQDQQEAG DQCADADDQI QGLEDDYDGE ALTDSSSEE
001: MATIQKLEEV AGKDQTLRAV DLTIINGVRN VETSRPFQVN PTVSLEPKAE PVMPSFSMSL APPSSTGPPL KRASTKDRHT KVEGRGRRIR MPATCAARIF
101: QLTRELGHKS DGETIRWLLE NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDMGE NLMKKKRKRP SNSEYIDISD AVSASSGLAP IATTTTIQPP
201: QALASSTVAQ QLLPQGMYPM WAIPSNAMIP TVGAFFLIPQ IAGPSNQPQL LAFPAAAASP SSYVAAVQQA STMARPPPLQ VVPSSGFVSV SDVSGSNLSR
301: ATSVMAPSSS SGVTTGSSSS IATTTTHTLR DFSLEIYEKQ ELHQFMSTTT ARSSNH
101: QLTRELGHKS DGETIRWLLE NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDMGE NLMKKKRKRP SNSEYIDISD AVSASSGLAP IATTTTIQPP
201: QALASSTVAQ QLLPQGMYPM WAIPSNAMIP TVGAFFLIPQ IAGPSNQPQL LAFPAAAASP SSYVAAVQQA STMARPPPLQ VVPSSGFVSV SDVSGSNLSR
301: ATSVMAPSSS SGVTTGSSSS IATTTTHTLR DFSLEIYEKQ ELHQFMSTTT ARSSNH
Arabidopsis Description
TCP9Transcription factor TCP9 [Source:UniProtKB/Swiss-Prot;Acc:O64647]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.