Factsheet for TraesCS1B01G265600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G504600.1
TraesCS2D01G505300.1
TraesCS6A01G306500.1
TraesCS6B01G334900.1
TraesCS6D01G285600.1
TraesCS7B01G091900.1
TraesCS7D01G187600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04800.1	TraesCS2A01G504600.1	AT1G22920.1	21798944
AT4G04800.1	TraesCS2D01G505300.1	AT1G22920.1	21798944
AT4G04800.1	TraesCS6A01G306500.1	AT3G47620.1	21798944
AT4G04800.1	TraesCS6B01G334900.1	AT3G47620.1	21798944
AT4G04800.1	TraesCS6D01G285600.1	AT3G47620.1	21798944
AT4G04800.1	TraesCS7B01G091900.1	AT3G47620.1	21798944
AT4G04800.1	TraesCS7D01G187600.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P05970_001	Banana	cytosol	52.51	84.56
KRH11321	Soybean	cytosol	48.86	77.54
Solyc01g080410.2.1	Tomato	cytosol	47.49	77.04
TraesCS1D01G252100.1	Wheat	mitochondrion, plastid	76.26	76.96
VIT_05s0020g02340.t01	Wine grape	cytosol	48.4	76.81
KRH20953	Soybean	cytosol	47.95	76.09
TraesCS6B01G362800.2	Wheat	cytosol	46.12	75.37
CDX94577	Canola	cytosol	46.58	75.0
AT4G04830.1	Thale cress	cytosol	46.58	73.38
TraesCS1A01G252400.1	Wheat	mitochondrion, plastid	69.86	71.16
AT4G04810.1	Thale cress	cytosol	43.38	68.35
CDX90878	Canola	cytosol	44.29	68.31
CDY21318	Canola	cytosol	43.84	67.61
Bra000806.1-P	Field mustard	cytosol	43.84	67.61
CDX76396	Canola	cytosol, plastid	43.38	65.97
Bra020868.1-P	Field mustard	cytosol, plastid	43.38	65.97
CDY27421	Canola	cytosol, plastid	43.38	65.97
AT4G21850.1	Thale cress	cytosol	42.01	64.34
AT4G21840.1	Thale cress	cytosol	41.1	62.94
AT4G21830.1	Thale cress	cytosol	41.1	62.5
AT4G04800.1	Thale cress	extracellular, plasma membrane, vacuole	47.95	59.66
VIT_00s0282g00010.t01	Wine grape	plastid	52.97	58.88
Solyc01g106400.2.1	Tomato	plastid	44.75	57.31
PGSC0003DMT400068883	Potato	cytosol	52.05	57.0
CDY16645	Canola	mitochondrion, plastid	39.27	56.95
EES18201	Sorghum	mitochondrion	56.62	56.88
KRH21686	Soybean	plastid	52.05	56.44
CDX94059	Canola	plastid	54.34	56.4
Os05t0404200-01	Rice	plasma membrane	58.9	56.33
CDX82871	Canola	plastid	51.14	56.0
AT4G21860.1	Thale cress	plastid	51.6	55.94
AT4G04840.1	Thale cress	cytosol	38.81	55.56
Solyc10g047930.1.1	Tomato	plastid	49.77	55.33
CDX98708	Canola	plastid	52.97	54.98
Zm00001d010336_P001	Maize	mitochondrion	54.34	54.84
Bra038753.1-P	Field mustard	plastid	51.6	54.59
PGSC0003DMT400008074	Potato	plastid	44.75	53.85
KRH10659	Soybean	plastid	49.77	53.43
Bra013565.1-P	Field mustard	plastid	50.68	51.87
CDX79099	Canola	plastid	49.32	50.94
TraesCS7B01G247500.2	Wheat	plastid	29.22	32.49

Protein Annotations

Gene3D:2.170.150.20	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006950	GO:GO:0006979
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016671	GO:GO:0019538	GO:GO:0030091
GO:GO:0033743	GO:GO:0055114	InterPro:IPR002579	InterPro:Met_Sox_Rdtase	InterPro:Met_Sox_Rdtase_MsrB	InterPro:Mss4-like_sf
PFAM:PF01641	PFscan:PS51790	PANTHER:PTHR10173	PANTHER:PTHR10173:SF52	SUPFAM:SSF51316	TIGRFAMs:TIGR00357
EnsemblPlantsGene:TraesCS1B01G265600	EnsemblPlants:TraesCS1B01G265600.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1B:-:466089492..466091977

Molecular Weight (calculated)

23398.8 Da

IEP (calculated)

8.756

GRAVY (calculated)

-0.329

Length

219 amino acids

Sequence
(BLAST)

001: MGGVQHLLKL RMASPHAHPA TRPLSALPSL LLARSSSAAA TAASSARPAS LSLPLSCSRP RARAYCPARR RLPGSVVAMS SSAPTPGPVQ KSEEEWEAVL
101: TPEQFRILRR KGTEFPGTGE YDKFFDEGIY GCAGCGTPLY KSSTKFNSGC GWPAFYEGFP GAIKRTADPD GRRIEITCAA CEGHLGHVFK GEGFNTPTDE
201: RHCVNSISLK FVPASEEAS

Best Arabidopsis Sequence Match ( AT4G21860.3 )
(BLAST)

001: MAFNIITPGR VYSATSLTFV STIKAAFVKP PLASPSRRNL LRFSSSPLSF PSLRRGFHGG RIVAMGSSAP ESVNKPEEEW RAILSPEQFR ILRQKGTEYP
101: GTGEYNKVFD DGIYCCAGCG TPLYKSTTKF DSGCGWPAFF DGLPGAITRT PDPDGRRIEI TCAACGGHLG HVFKGEGFPT PTDERHCVNS ISLKFTPENP
201: TL

Arabidopsis Description

MSRB2Peptide methionine sulfoxide reductase B2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5C8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.