CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03466
KRH52586
KRH54542
KRH56919
KRH61926
KRH63357

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04800.1	KRH52586	AT1G22920.1	21798944
AT4G04800.1	KRH61926	AT1G22920.1	21798944
AT4G04800.1	KRH03466	AT3G47620.1	21798944
AT4G04800.1	KRH54542	AT3G47620.1	21798944
AT4G04800.1	KRH56919	AT3G47620.1	21798944
AT4G04800.1	KRH63357	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10659	Soybean	plastid	91.09	90.2
GSMUA_Achr8P05970_001	Banana	cytosol	53.47	79.41
KRH11321	Soybean	cytosol	52.48	76.81
KRH20953	Soybean	cytosol	51.98	76.09
CDX94577	Canola	cytosol	50.0	74.26
AT4G04830.1	Thale cress	cytosol	50.49	73.38
AT4G04810.1	Thale cress	cytosol	48.02	69.78
CDY21318	Canola	cytosol	48.51	69.01
CDX90878	Canola	cytosol	48.51	69.01
Bra000806.1-P	Field mustard	cytosol	48.02	68.31
PGSC0003DMT400068883	Potato	cytosol	64.36	65.0
Bra020868.1-P	Field mustard	cytosol, plastid	45.54	63.89
CDX76396	Canola	cytosol, plastid	45.54	63.89
CDY27421	Canola	cytosol, plastid	45.54	63.89
Solyc10g047930.1.1	Tomato	plastid	61.39	62.94
AT4G21840.1	Thale cress	cytosol	44.55	62.94
AT4G21830.1	Thale cress	cytosol	44.55	62.5
VIT_00s0282g00010.t01	Wine grape	plastid	60.89	62.44
AT4G04800.1	Thale cress	extracellular, plasma membrane, vacuole	53.96	61.93
AT4G21850.1	Thale cress	cytosol	43.56	61.54
Solyc01g106400.2.1	Tomato	plastid	51.98	61.4
CDX82871	Canola	plastid	57.92	58.5
AT4G04840.1	Thale cress	cytosol	44.06	58.17
AT4G21860.1	Thale cress	plastid	57.92	57.92
PGSC0003DMT400008074	Potato	plastid	51.98	57.69
Bra038753.1-P	Field mustard	plastid	58.91	57.49
CDX94059	Canola	plastid	59.9	57.35
CDX98708	Canola	plastid	58.42	55.92
CDX79099	Canola	plastid	57.92	55.19
Bra013565.1-P	Field mustard	plastid	57.43	54.21
TraesCS1A01G252400.1	Wheat	mitochondrion, plastid	57.43	53.95
TraesCS1D01G252100.1	Wheat	mitochondrion, plastid	56.93	53.0
TraesCS1B01G265600.1	Wheat	mitochondrion, plastid	56.44	52.05
CDY16645	Canola	mitochondrion, plastid	38.12	50.99
EES18201	Sorghum	mitochondrion	54.95	50.92
Zm00001d010336_P001	Maize	mitochondrion	54.46	50.69
Os05t0404200-01	Rice	plasma membrane	55.94	49.34
KRH44863	Soybean	plastid	29.7	29.7

Protein Annotations

Gene3D:2.170.150.20	MapMan:35.1	UniProt:A0A0R0GU41	EMBL:ACUP02008362	EnsemblPlantsGene:GLYMA_13G253800	GO:GO:0003674
GO:GO:0003824	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016671	GO:GO:0019538	GO:GO:0030091	GO:GO:0033743	GO:GO:0055114	InterPro:IPR002579
EnsemblPlants:KRH21686	ProteinID:KRH21686	ProteinID:KRH21686.1	InterPro:Met_Sox_Rdtase	InterPro:Met_Sox_Rdtase_MsrB	InterPro:Mss4-like_sf
PFAM:PF01641	PFscan:PS51790	PANTHER:PTHR10173	PANTHER:PTHR10173:SF52	SUPFAM:SSF51316	TIGRFAMs:TIGR00357
UniParc:UPI0001949589	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:35984370..35987199

Molecular Weight (calculated)

21692.8 Da

IEP (calculated)

9.121

GRAVY (calculated)

-0.202

Length

202 amino acids

Sequence
(BLAST)

001: MGLSILRSTS ISTPISSSKS KPIFSTLVRS SFASISPTKC VTPTTLFVSA TPFFTASPKR GFRGGIVAMA AAGSLRKSEE EWRAVLSPEQ FRILRQKGTE
101: FPGTGEYDKF FDEGVYNCAG CGTPLYRSLT KFNSGCGWPA FYEGIPGAIN RNPDPDGMRT EITCAACGGH LGHVFKGEGF PTPTNERHCV NSISLKFAPA
201: NS

Best Arabidopsis Sequence Match ( AT4G21860.3 )
(BLAST)

001: MAFNIITPGR VYSATSLTFV STIKAAFVKP PLASPSRRNL LRFSSSPLSF PSLRRGFHGG RIVAMGSSAP ESVNKPEEEW RAILSPEQFR ILRQKGTEYP
101: GTGEYNKVFD DGIYCCAGCG TPLYKSTTKF DSGCGWPAFF DGLPGAITRT PDPDGRRIEI TCAACGGHLG HVFKGEGFPT PTDERHCVNS ISLKFTPENP
201: TL

Arabidopsis Description

MSRB2Peptide methionine sulfoxide reductase B2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5C8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.