Factsheet for Os05t0404200-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 3
mitochondrion 4
peroxisome 2
plastid 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0747400-01
Os04t0654700-02
Os06t0226700-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04800.1	Os04t0654700-02	AT1G22920.1	21798944
AT4G04800.1	Os02t0747400-01	AT3G47620.1	21798944
AT4G04800.1	Os06t0226700-01	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P05970_001	Banana	cytosol	50.66	85.29
Solyc01g080410.2.1	Tomato	cytosol	47.16	80.0
Os03t0360700-01	Rice	plasma membrane, plastid	47.16	79.41
KRH11321	Soybean	cytosol	47.16	78.26
KRH20953	Soybean	cytosol	46.72	77.54
VIT_05s0020g02340.t01	Wine grape	cytosol	46.29	76.81
CDX94577	Canola	cytosol	44.1	74.26
AT4G04830.1	Thale cress	cytosol	44.54	73.38
AT4G04810.1	Thale cress	cytosol	41.92	69.06
CDX90878	Canola	cytosol	42.79	69.01
CDY21318	Canola	cytosol	42.36	68.31
Bra000806.1-P	Field mustard	cytosol	42.36	68.31
CDX76396	Canola	cytosol, plastid	42.36	67.36
CDY27421	Canola	cytosol, plastid	42.36	67.36
Bra020868.1-P	Field mustard	cytosol, plastid	42.36	67.36
AT4G21850.1	Thale cress	cytosol	41.48	66.43
AT4G21830.1	Thale cress	cytosol	40.17	63.89
AT4G21840.1	Thale cress	cytosol	39.74	63.64
EES18201	Sorghum	mitochondrion	58.52	61.47
TraesCS1A01G252400.1	Wheat	mitochondrion, plastid	57.64	61.4
TraesCS1D01G252100.1	Wheat	mitochondrion, plastid	58.08	61.29
VIT_00s0282g00010.t01	Wine grape	plastid	52.4	60.91
Solyc01g106400.2.1	Tomato	plastid	45.41	60.82
PGSC0003DMT400068883	Potato	cytosol	52.84	60.5
AT4G04800.1	Thale cress	extracellular, plasma membrane, vacuole	46.29	60.23
Zm00001d010336_P001	Maize	mitochondrion	55.9	58.99
TraesCS1B01G265600.1	Wheat	mitochondrion, plastid	56.33	58.9
Solyc10g047930.1.1	Tomato	plastid	50.66	58.88
CDX82871	Canola	plastid	51.09	58.5
AT4G21860.1	Thale cress	plastid	49.78	56.44
CDY16645	Canola	mitochondrion, plastid	37.12	56.29
AT4G04840.1	Thale cress	cytosol	37.55	56.21
KRH21686	Soybean	plastid	49.34	55.94
CDX79099	Canola	plastid	51.53	55.66
PGSC0003DMT400008074	Potato	plastid	44.1	55.49
KRH10659	Soybean	plastid	49.34	55.39
CDX94059	Canola	plastid	50.66	54.98
CDX98708	Canola	plastid	49.78	54.03
Bra038753.1-P	Field mustard	plastid	48.47	53.62
Bra013565.1-P	Field mustard	plastid	49.78	53.27
Os06t0472000-01	Rice	plastid	27.51	29.72

Protein Annotations

Gene3D:2.170.150.20	MapMan:35.1	EntrezGene:4338744	ProteinID:AAT85217.1	EMBL:AK071730	EMBL:AK104169
ProteinID:BAF17415.1	ProteinID:BAS93936.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016491	GO:GO:0016671
GO:GO:0019538	GO:GO:0030091	GO:GO:0033743	GO:GO:0046872	GO:GO:0055114	InterPro:IPR002579
InterPro:Met_Sox_Rdtase	InterPro:Met_Sox_Rdtase_MsrB	InterPro:Mss4-like_sf	EnsemblPlantsGene:Os05g0404200	EnsemblPlants:Os05t0404200-01	PFAM:PF01641
PFscan:PS51790	PANTHER:PTHR10173	PANTHER:PTHR10173:SF52	UniProt:Q6AUK5	SUPFAM:SSF51316	TIGRFAMs:TIGR00357
UniParc:UPI0000401B26	RefSeq:XP_015637300.1	SEG:seg	:	:	:

Description

Methionine sulfoxide reductase B3Methionine sulphoxide reductase B domain containing protein. (Os05t0404200-01);Similar to Peptide methionine sulfoxide reductase B3, chloroplastic. (Os05t0404200-02)

Coordinates

chr5:+:19681768..19684597

Molecular Weight (calculated)

24686.3 Da

IEP (calculated)

8.656

GRAVY (calculated)

-0.390

Length

229 amino acids

Sequence
(BLAST)

001: MGVQHLLKLR MASPHPHPHP GAPLAARPLS ALASFFLARP SSTAAAPPPR HVTLSCSRPH CNHNQWAASR CRGTAGRRRL QVVVAMSSSA PPPPPGSVQK
101: SEEEWEAILS PEQFRILRLK GTEYPGTGEY DKLFAEGVYE CAGCGTPLYK SSTKFNSGCG WPAFYEGFPG AIARTPDPDG RRIEITCAAC GGHLGHVFKG
201: EGFNTPTDER HCVNSISLKF IPASEDSKL

Best Arabidopsis Sequence Match ( AT4G21860.3 )
(BLAST)

001: MAFNIITPGR VYSATSLTFV STIKAAFVKP PLASPSRRNL LRFSSSPLSF PSLRRGFHGG RIVAMGSSAP ESVNKPEEEW RAILSPEQFR ILRQKGTEYP
101: GTGEYNKVFD DGIYCCAGCG TPLYKSTTKF DSGCGWPAFF DGLPGAITRT PDPDGRRIEI TCAACGGHLG HVFKGEGFPT PTDERHCVNS ISLKFTPENP
201: TL

Arabidopsis Description

MSRB2Peptide methionine sulfoxide reductase B2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5C8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.