CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX94059	Canola	plastid	95.26	95.26
GSMUA_Achr8P05970_001	Banana	cytosol	53.08	82.35
CDX94577	Canola	cytosol	50.24	77.94
Bra038753.1-P	Field mustard	plastid	75.36	76.81
CDX82871	Canola	plastid	70.62	74.5
AT4G21860.1	Thale cress	plastid	70.62	73.76
CDX90878	Canola	cytosol	48.34	71.83
CDY21318	Canola	cytosol	48.34	71.83
CDX79099	Canola	plastid	71.09	70.75
CDX76396	Canola	cytosol, plastid	46.92	68.75
CDY27421	Canola	cytosol, plastid	46.92	68.75
PGSC0003DMT400068883	Potato	cytosol	57.35	60.5
Solyc01g106400.2.1	Tomato	plastid	48.82	60.23
Solyc10g047930.1.1	Tomato	plastid	54.98	58.88
KRH21686	Soybean	plastid	55.92	58.42
VIT_00s0282g00010.t01	Wine grape	plastid	54.5	58.38
KRH10659	Soybean	plastid	55.45	57.35
CDY16645	Canola	mitochondrion, plastid	40.28	56.29
TraesCS1A01G252400.1	Wheat	mitochondrion, plastid	55.45	54.42
PGSC0003DMT400008074	Potato	plastid	46.92	54.4
TraesCS1B01G265600.1	Wheat	mitochondrion, plastid	54.98	52.97
TraesCS1D01G252100.1	Wheat	mitochondrion, plastid	54.03	52.53
Os05t0404200-01	Rice	plasma membrane	54.03	49.78
Zm00001d010336_P001	Maize	mitochondrion	50.71	49.31
EES18201	Sorghum	mitochondrion	50.24	48.62
CDY45127	Canola	plastid	28.91	29.9
CDY24080	Canola	plastid	28.44	29.41

Protein Annotations

Gene3D:2.170.150.20	MapMan:35.1	GO:A0A078EH99	EnsemblPlants:CDX98708	ProteinID:CDX98708	ProteinID:CDX98708.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016671	GO:GO:0019538	GO:GO:0030091	GO:GO:0033743	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00106775001	InterPro:IPR002579	InterPro:Met_Sox_Rdtase	InterPro:Met_Sox_Rdtase_MsrB	InterPro:Mss4-like_sf	PFAM:PF01641
PFscan:PS51790	PANTHER:PTHR10173	PANTHER:PTHR10173:SF52	SUPFAM:SSF51316	TIGRFAMs:TIGR00357	UniParc:UPI0004EDAD60
SEG:seg	:	:	:	:	:

Description

BnaA03g44930D

Coordinates

chrLK031906:-:787313..788925

Molecular Weight (calculated)

22402.5 Da

IEP (calculated)

9.353

GRAVY (calculated)

-0.195

Length

211 amino acids

Sequence
(BLAST)

001: MALNVIQSSV RVSSATSLTF SSTIKSFVTP SLSLATHRFS LSPPANLNLL RIPSSPPSSS SLRRGFRGGR IAAMASSAPG SVNKPEEEWR AILSPEQFRI
101: LRQKGTEYPG TGEYNKVFTD GIYSCAGCGT PLYKSATKFD SGCGWPAFFD GIPGAINRTA DPDGRRIEIT CAACGGHLGH VFKGEGFPTP TDERHCVNSV
201: SLKFAPGNAA L

Best Arabidopsis Sequence Match ( AT4G21860.3 )
(BLAST)

001: MAFNIITPGR VYSATSLTFV STIKAAFVKP PLASPSRRNL LRFSSSPLSF PSLRRGFHGG RIVAMGSSAP ESVNKPEEEW RAILSPEQFR ILRQKGTEYP
101: GTGEYNKVFD DGIYCCAGCG TPLYKSTTKF DSGCGWPAFF DGLPGAITRT PDPDGRRIEI TCAACGGHLG HVFKGEGFPT PTDERHCVNS ISLKFTPENP
201: TL

Arabidopsis Description

MSRB2Peptide methionine sulfoxide reductase B2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5C8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.