CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03466
KRH52586
KRH54542
KRH56919
KRH61926
KRH63357

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04800.1	KRH52586	AT1G22920.1	21798944
AT4G04800.1	KRH61926	AT1G22920.1	21798944
AT4G04800.1	KRH03466	AT3G47620.1	21798944
AT4G04800.1	KRH54542	AT3G47620.1	21798944
AT4G04800.1	KRH56919	AT3G47620.1	21798944
AT4G04800.1	KRH63357	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21686	Soybean	plastid	90.2	91.09
KRH20953	Soybean	cytosol	53.92	79.71
GSMUA_Achr8P05970_001	Banana	cytosol	52.94	79.41
KRH11321	Soybean	cytosol	52.94	78.26
AT4G04830.1	Thale cress	cytosol	50.49	74.1
CDX94577	Canola	cytosol	49.02	73.53
AT4G04810.1	Thale cress	cytosol	47.55	69.78
CDX90878	Canola	cytosol	48.53	69.72
CDY21318	Canola	cytosol	48.53	69.72
Bra000806.1-P	Field mustard	cytosol	48.04	69.01
PGSC0003DMT400068883	Potato	cytosol	63.24	64.5
Bra020868.1-P	Field mustard	cytosol, plastid	45.1	63.89
CDY27421	Canola	cytosol, plastid	45.1	63.89
CDX76396	Canola	cytosol, plastid	45.1	63.89
AT4G04800.1	Thale cress	extracellular, plasma membrane, vacuole	54.41	63.07
VIT_00s0282g00010.t01	Wine grape	plastid	60.78	62.94
Solyc10g047930.1.1	Tomato	plastid	59.8	61.93
AT4G21840.1	Thale cress	cytosol	43.14	61.54
Solyc01g106400.2.1	Tomato	plastid	51.47	61.4
AT4G21830.1	Thale cress	cytosol	43.14	61.11
CDX82871	Canola	plastid	59.8	61.0
AT4G21850.1	Thale cress	cytosol	42.65	60.84
AT4G21860.1	Thale cress	plastid	57.35	57.92
AT4G04840.1	Thale cress	cytosol	43.14	57.52
Bra038753.1-P	Field mustard	plastid	57.84	57.0
PGSC0003DMT400008074	Potato	plastid	50.49	56.59
CDX94059	Canola	plastid	57.84	55.92
CDX98708	Canola	plastid	57.35	55.45
CDX79099	Canola	plastid	56.86	54.72
Bra013565.1-P	Field mustard	plastid	56.86	54.21
CDY16645	Canola	mitochondrion, plastid	38.24	51.66
TraesCS1A01G252400.1	Wheat	mitochondrion, plastid	53.92	51.16
TraesCS1D01G252100.1	Wheat	mitochondrion, plastid	54.41	51.15
Zm00001d010336_P001	Maize	mitochondrion	53.43	50.23
EES18201	Sorghum	mitochondrion	53.43	50.0
TraesCS1B01G265600.1	Wheat	mitochondrion, plastid	53.43	49.77
Os05t0404200-01	Rice	plasma membrane	55.39	49.34
KRH44863	Soybean	plastid	29.41	29.7

Protein Annotations

EntrezGene:100784622	Gene3D:2.170.150.20	MapMan:35.1	EMBL:ACUP02009151	EnsemblPlantsGene:GLYMA_15G061100	GO:GO:0003674
GO:GO:0003824	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016671	GO:GO:0019538	GO:GO:0030091	GO:GO:0033743	GO:GO:0055114	UniProt:I1ME37
InterPro:IPR002579	EnsemblPlants:KRH10659	ProteinID:KRH10659	ProteinID:KRH10659.1	InterPro:Met_Sox_Rdtase	InterPro:Met_Sox_Rdtase_MsrB
InterPro:Mss4-like_sf	PFAM:PF01641	PFscan:PS51790	PANTHER:PTHR10173	PANTHER:PTHR10173:SF52	SUPFAM:SSF51316
TIGRFAMs:TIGR00357	UniParc:UPI00016EB189	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr15:+:4711531..4715000

Molecular Weight (calculated)

22171.4 Da

IEP (calculated)

9.032

GRAVY (calculated)

-0.260

Length

204 amino acids

Sequence
(BLAST)

001: MGFNILRTTS ISTPISSSKS KPIFSTLLRS SPSTIFPPKS VTPTTLFVSA TPFFTLHPKL GFRGGIVAMA APGSLRKSEE EWRAILSPEQ FRILRQKGTE
101: FPGTGEYDKF YEEGVYNCAG CGTPLYRSIT KFNSGCGWPA FYEGIPGAIN RNPDPDGMRT EITCAACGGH LGHVFKGEGF PTPTNERHCV NSISLKFAPA
201: NSYS

Best Arabidopsis Sequence Match ( AT4G21860.3 )
(BLAST)

001: MAFNIITPGR VYSATSLTFV STIKAAFVKP PLASPSRRNL LRFSSSPLSF PSLRRGFHGG RIVAMGSSAP ESVNKPEEEW RAILSPEQFR ILRQKGTEYP
101: GTGEYNKVFD DGIYCCAGCG TPLYKSTTKF DSGCGWPAFF DGLPGAITRT PDPDGRRIEI TCAACGGHLG HVFKGEGFPT PTDERHCVNS ISLKFTPENP
201: TL

Arabidopsis Description

MSRB2Peptide methionine sulfoxide reductase B2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5C8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.