CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70737
CDX84994
CDX84995
CDX87453
CDY03849
CDY04768
CDY21400
CDY24170
CDY24397
CDY24398
CDY24399
CDY25761
CDY31621
CDY35849
CDY36104
CDY36943
CDY42101
CDY51132
CDY70440

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04800.1	CDY04768	AT1G22920.1	21798944
AT4G04800.1	CDY21400	AT1G22920.1	21798944
AT4G04800.1	CDY25761	AT1G22920.1	21798944
AT4G04800.1	CDX70737	AT1G25490.1	21798944
AT4G04800.1	CDX84994	AT1G25490.1	21798944
AT4G04800.1	CDX84995	AT1G25490.1	21798944
AT4G04800.1	CDX87453	AT1G25490.1	21798944
AT4G04800.1	CDY03849	AT1G25490.1	21798944
AT4G04800.1	CDY24397	AT1G25490.1	21798944
AT4G04800.1	CDY24398	AT1G25490.1	21798944
AT4G04800.1	CDY24399	AT1G25490.1	21798944
AT4G04800.1	CDY31621	AT1G25490.1	21798944
AT4G04800.1	CDY35849	AT1G25490.1	21798944
AT4G04800.1	CDY36104	AT1G25490.1	21798944
AT4G04800.1	CDY42101	AT1G25490.1	21798944
AT4G04800.1	CDY51132	AT1G25490.1	21798944
AT4G04800.1	CDY70440	AT1G25490.1	21798944
AT4G04800.1	CDY24170	AT3G47620.1	21798944
AT4G04800.1	CDY36943	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX94577	Canola	cytosol	66.23	73.53
GSMUA_Achr8P05970_001	Banana	cytosol	54.3	60.29
AT4G04800.1	Thale cress	extracellular, plasma membrane, vacuole	60.93	52.27
CDY21318	Canola	cytosol	47.02	50.0
CDX90878	Canola	cytosol	46.36	49.3
CDX76396	Canola	cytosol, plastid	46.36	48.61
CDY27421	Canola	cytosol, plastid	46.36	48.61
PGSC0003DMT400068883	Potato	cytosol	58.94	44.5
Solyc10g047930.1.1	Tomato	plastid	56.29	43.15
VIT_00s0282g00010.t01	Wine grape	plastid	55.63	42.64
CDX82871	Canola	plastid	56.29	42.5
TraesCS1A01G252400.1	Wheat	mitochondrion, plastid	58.94	41.4
CDX94059	Canola	plastid	56.95	40.76
CDX79099	Canola	plastid	56.95	40.57
Solyc01g106400.2.1	Tomato	plastid	45.7	40.35
CDX98708	Canola	plastid	56.29	40.28
TraesCS1B01G265600.1	Wheat	mitochondrion, plastid	56.95	39.27
TraesCS1D01G252100.1	Wheat	mitochondrion, plastid	55.63	38.71
KRH10659	Soybean	plastid	51.66	38.24
KRH21686	Soybean	plastid	50.99	38.12
Os05t0404200-01	Rice	plasma membrane	56.29	37.12
PGSC0003DMT400008074	Potato	plastid	44.37	36.81
EES18201	Sorghum	mitochondrion	52.32	36.24
Zm00001d010336_P001	Maize	mitochondrion	50.33	35.02
CDY45127	Canola	plastid	30.46	22.55
CDY24080	Canola	plastid	30.46	22.55

Protein Annotations

Gene3D:2.170.150.20	MapMan:35.1	GO:A0A078FQA7	UniProt:A0A078FQA7	EnsemblPlants:CDY16645	ProteinID:CDY16645
ProteinID:CDY16645.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016671	GO:GO:0019538	GO:GO:0030091	GO:GO:0033743
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00094481001	InterPro:IPR002579	InterPro:Met_Sox_Rdtase	InterPro:Met_Sox_Rdtase_MsrB	InterPro:Mss4-like_sf
PFAM:PF01641	PFscan:PS51790	PANTHER:PTHR10173	PANTHER:PTHR10173:SF46	SUPFAM:SSF51316	UniParc:UPI0004EED68F

Description

BnaA09g20230DBnaA09g20230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FQA7]

Coordinates

chrLK032066:-:251779..253195

Molecular Weight (calculated)

16225.5 Da

IEP (calculated)

8.766

GRAVY (calculated)

-0.176

Length

151 amino acids

Sequence
(BLAST)

001: MSSAKPPKSS RIPVSKVALK ITPKSLLAKR CVLINSSSPI GDWDARIYPG TREFVDFNKE GIYGCAGCKT PLYKSTTKFN AGCGWPAFFD GIPCAITRTA
101: DLDGRRIEIN CAACGGHLGH VFKGEGFATP TDERHCVNSV SLNFTPAEPS L

Best Arabidopsis Sequence Match ( AT4G04800.1 )
(BLAST)

001: MNIVNSKILF LSFTLLLLLQ SSIVESDSIC LSSGVASTVA MAAPGSVQKG DEEWRAILSP EQFRILRQKG TEYPGTGEYV NFDKEGVYGC VGCNAPLYKS
101: TTKFNAGCGW PAFFEGIPGA ITRTTDPDGR RIEINCATCG GHLGHVFKGE GFATPTDERH CVNSVSLKFT PAASSL

Arabidopsis Description

MSRB3Peptide methionine sulfoxide reductase B3 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0Z6]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.