CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P05970_001	Banana	cytosol	57.0	83.82
CDX79099	Canola	plastid	82.5	77.83
Bra013565.1-P	Field mustard	plastid	83.0	77.57
CDX94577	Canola	cytosol	51.0	75.0
CDX90878	Canola	cytosol	51.5	72.54
CDY21318	Canola	cytosol	51.5	72.54
AT4G21860.1	Thale cress	plastid	72.0	71.29
CDX98708	Canola	plastid	74.5	70.62
CDX94059	Canola	plastid	73.5	69.67
CDX76396	Canola	cytosol, plastid	49.5	68.75
CDY27421	Canola	cytosol, plastid	49.5	68.75
Solyc01g106400.2.1	Tomato	plastid	52.5	61.4
KRH10659	Soybean	plastid	61.0	59.8
PGSC0003DMT400068883	Potato	cytosol	59.5	59.5
Solyc10g047930.1.1	Tomato	plastid	57.5	58.38
KRH21686	Soybean	plastid	58.5	57.92
VIT_00s0282g00010.t01	Wine grape	plastid	57.0	57.87
PGSC0003DMT400008074	Potato	plastid	51.5	56.59
CDY16645	Canola	mitochondrion, plastid	42.5	56.29
TraesCS1A01G252400.1	Wheat	mitochondrion, plastid	57.5	53.49
TraesCS1D01G252100.1	Wheat	mitochondrion, plastid	55.5	51.15
TraesCS1B01G265600.1	Wheat	mitochondrion, plastid	56.0	51.14
Os05t0404200-01	Rice	plasma membrane	58.5	51.09
Zm00001d010336_P001	Maize	mitochondrion	55.0	50.69
EES18201	Sorghum	mitochondrion	55.0	50.46
CDY45127	Canola	plastid	30.0	29.41
CDY24080	Canola	plastid	30.0	29.41

Protein Annotations

Gene3D:2.170.150.20	MapMan:35.1	GO:A0A078D0F0	EnsemblPlants:CDX82871	ProteinID:CDX82871	ProteinID:CDX82871.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016671	GO:GO:0019538	GO:GO:0030091	GO:GO:0033743	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00138232001	InterPro:IPR002579	InterPro:Met_Sox_Rdtase	InterPro:Met_Sox_Rdtase_MsrB	InterPro:Mss4-like_sf	PFAM:PF01641
PFscan:PS51790	PANTHER:PTHR10173	PANTHER:PTHR10173:SF52	SUPFAM:SSF51316	TIGRFAMs:TIGR00357	UniParc:UPI0004EAF1A2
SEG:seg	:	:	:	:	:

Description

BnaC01g13210D

Coordinates

chrLK031830:-:985101..986778

Molecular Weight (calculated)

21533.6 Da

IEP (calculated)

8.604

GRAVY (calculated)

-0.288

Length

200 amino acids

Sequence
(BLAST)

001: MALNVISSSS SATTIRAFVR PSLSLRITRF ANPNLLPLSA SPSSFPPLRL LSRGFHGGRI TAMSSPAPGS VNKPEEEWRA ILSPEQFRIL RQKGTEYPGT
101: GEYNKLFEDG IYSCAGCGTP LYKSATKFDS GCGWPAFFDG LPGAINRTPD PDGRRIEITC AACGGHLGHV FKGEGFPTPT DERHCVNSIS LKFAPGNQDL

Best Arabidopsis Sequence Match ( AT4G21860.3 )
(BLAST)

001: MAFNIITPGR VYSATSLTFV STIKAAFVKP PLASPSRRNL LRFSSSPLSF PSLRRGFHGG RIVAMGSSAP ESVNKPEEEW RAILSPEQFR ILRQKGTEYP
101: GTGEYNKVFD DGIYCCAGCG TPLYKSTTKF DSGCGWPAFF DGLPGAITRT PDPDGRRIEI TCAACGGHLG HVFKGEGFPT PTDERHCVNS ISLKFTPENP
201: TL

Arabidopsis Description

MSRB2Peptide methionine sulfoxide reductase B2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5C8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.