Factsheet for PGSC0003DMT400068883

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 8
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001613
PGSC0003DMT400023896
PGSC0003DMT400069203

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04800.1	PGSC0003DMT400023896	AT1G22920.1	21798944
AT4G04800.1	PGSC0003DMT400069203	AT1G22920.1	21798944
AT4G04800.1	PGSC0003DMT400001613	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P05970_001	Banana	cytosol	57.5	84.56
CDX94577	Canola	cytosol	53.0	77.94
AT4G04830.1	Thale cress	cytosol	53.5	76.98
Solyc10g047930.1.1	Tomato	plastid	72.5	73.6
CDY21318	Canola	cytosol	51.5	72.54
AT4G04810.1	Thale cress	cytosol	50.0	71.94
Bra000806.1-P	Field mustard	cytosol	51.0	71.83
CDX90878	Canola	cytosol	51.0	71.83
Bra020868.1-P	Field mustard	cytosol, plastid	47.5	65.97
CDX76396	Canola	cytosol, plastid	47.5	65.97
CDY27421	Canola	cytosol, plastid	47.5	65.97
AT4G04800.1	Thale cress	extracellular, plasma membrane, vacuole	58.0	65.91
AT4G21850.1	Thale cress	cytosol	47.0	65.73
KRH21686	Soybean	plastid	65.0	64.36
KRH10659	Soybean	plastid	64.5	63.24
AT4G21830.1	Thale cress	cytosol	45.5	63.19
AT4G21840.1	Thale cress	cytosol	45.0	62.94
VIT_00s0282g00010.t01	Wine grape	plastid	61.5	62.44
AT4G21860.1	Thale cress	plastid	61.0	60.4
CDX82871	Canola	plastid	59.5	59.5
AT4G04840.1	Thale cress	cytosol	45.5	59.48
CDY16645	Canola	mitochondrion, plastid	44.5	58.94
CDX79099	Canola	plastid	62.0	58.49
CDX94059	Canola	plastid	61.0	57.82
CDX98708	Canola	plastid	60.5	57.35
Bra013565.1-P	Field mustard	plastid	60.5	56.54
Bra038753.1-P	Field mustard	plastid	58.5	56.52
TraesCS1A01G252400.1	Wheat	mitochondrion, plastid	59.5	55.35
PGSC0003DMT400008074	Potato	plastid	49.5	54.4
TraesCS1D01G252100.1	Wheat	mitochondrion, plastid	57.5	53.0
Os05t0404200-01	Rice	plasma membrane	60.5	52.84
TraesCS1B01G265600.1	Wheat	mitochondrion, plastid	57.0	52.05
EES18201	Sorghum	mitochondrion	56.0	51.38
Zm00001d010336_P001	Maize	mitochondrion	55.0	50.69
PGSC0003DMT400018250	Potato	cytosol	29.0	39.19

Protein Annotations

EntrezGene:102588208	Gene3D:2.170.150.20	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005783	GO:GO:0006950
GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009631	GO:GO:0009987
GO:GO:0016671	GO:GO:0019538	GO:GO:0030091	GO:GO:0033743	GO:GO:0034599	GO:GO:0055114
GO:GO:0070191	InterPro:IPR002579	UniProt:M1CJM1	InterPro:Met_Sox_Rdtase	InterPro:Met_Sox_Rdtase_MsrB	InterPro:Mss4-like_sf
PFAM:PF01641	EnsemblPlantsGene:PGSC0003DMG400026788	PGSC:PGSC0003DMG400026788	EnsemblPlants:PGSC0003DMT400068883	PFscan:PS51790	PANTHER:PTHR10173
PANTHER:PTHR10173:SF52	SUPFAM:SSF51316	TIGRFAMs:TIGR00357	UniParc:UPI000295D864	RefSeq:XP_006363959.1	SEG:seg

Description

Chloroplast methionine sulfoxide reductase B2 [Source:PGSC_GENE;Acc:PGSC0003DMG400026788]

Coordinates

chr10:+:31157943..31162735

Molecular Weight (calculated)

21620.6 Da

IEP (calculated)

9.359

GRAVY (calculated)

-0.323

Length

200 amino acids

Sequence
(BLAST)

001: MGSHILKISP FASSTPLIFN ATPFLRFQAK RVVSICGHPK TQFRFSSSSS GFVPSSKRGF RGGVVAMAAP GSVHKSEEDW RAILSPEQFR ILRQKGTEYP
101: GTGEYDKFSA EGVYQCAGCG TPLYKSTTKF NSGCGWPAFF EGFPGAINRT PDPDGRRVEI TCAACGGHLG HVFKGEGFPT PTDERHCVNS VSLKFTPANS

Best Arabidopsis Sequence Match ( AT4G21860.3 )
(BLAST)

001: MAFNIITPGR VYSATSLTFV STIKAAFVKP PLASPSRRNL LRFSSSPLSF PSLRRGFHGG RIVAMGSSAP ESVNKPEEEW RAILSPEQFR ILRQKGTEYP
101: GTGEYNKVFD DGIYCCAGCG TPLYKSTTKF DSGCGWPAFF DGLPGAITRT PDPDGRRIEI TCAACGGHLG HVFKGEGFPT PTDERHCVNS ISLKFTPENP
201: TL

Arabidopsis Description

MSRB2Peptide methionine sulfoxide reductase B2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5C8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.