CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020868.1-P	Field mustard	cytosol, plastid	99.31	99.31
CDX76396	Canola	cytosol, plastid	99.31	99.31
AT4G21850.1	Thale cress	cytosol	77.78	78.32
AT4G21830.1	Thale cress	cytosol	75.69	75.69
AT4G21840.1	Thale cress	cytosol	75.0	75.52
CDX94577	Canola	cytosol	64.58	68.38
GSMUA_Achr8P05970_001	Banana	cytosol	63.19	66.91
CDY21318	Canola	cytosol	62.5	63.38
CDX90878	Canola	cytosol	62.5	63.38
Solyc01g106400.2.1	Tomato	plastid	60.42	50.88
VIT_00s0282g00010.t01	Wine grape	plastid	68.06	49.75
CDX82871	Canola	plastid	68.75	49.5
CDX94059	Canola	plastid	70.14	47.87
Solyc10g047930.1.1	Tomato	plastid	65.28	47.72
PGSC0003DMT400068883	Potato	cytosol	65.97	47.5
PGSC0003DMT400008074	Potato	plastid	59.72	47.25
CDX79099	Canola	plastid	69.44	47.17
CDX98708	Canola	plastid	68.75	46.92
CDY16645	Canola	mitochondrion, plastid	48.61	46.36
KRH21686	Soybean	plastid	63.89	45.54
KRH10659	Soybean	plastid	63.89	45.1
TraesCS1A01G252400.1	Wheat	mitochondrion, plastid	66.67	44.65
TraesCS1D01G252100.1	Wheat	mitochondrion, plastid	66.67	44.24
TraesCS1B01G265600.1	Wheat	mitochondrion, plastid	65.97	43.38
Zm00001d010336_P001	Maize	mitochondrion	63.89	42.4
Os05t0404200-01	Rice	plasma membrane	67.36	42.36
EES18201	Sorghum	mitochondrion	63.19	41.74
CDY45127	Canola	plastid	34.72	24.51
CDY24080	Canola	plastid	34.72	24.51

Protein Annotations

Gene3D:2.170.150.20	MapMan:35.1	GO:A0A078GQ38	UniProt:A0A078GQ38	EnsemblPlants:CDY27421	ProteinID:CDY27421
ProteinID:CDY27421.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016671	GO:GO:0019538	GO:GO:0030091	GO:GO:0033743
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00037391001	InterPro:IPR002579	InterPro:Met_Sox_Rdtase	InterPro:Met_Sox_Rdtase_MsrB	InterPro:Mss4-like_sf
PFAM:PF01641	PFscan:PS51790	PANTHER:PTHR10173	PANTHER:PTHR10173:SF52	SUPFAM:SSF51316	TIGRFAMs:TIGR00357
UniParc:UPI0001CB0F86	SEG:seg	:	:	:	:

Description

BnaC03g64610DBnaC03g64610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GQ38]

Coordinates

chrLK032204:-:136367..137610

Molecular Weight (calculated)

15616.3 Da

IEP (calculated)

6.898

GRAVY (calculated)

-0.451

Length

144 amino acids

Sequence
(BLAST)

001: MATTATSAAP SPGSVQKHDE EWRAVLSPEQ FRVLRKKGTE ARFKGEYTKL FEEGTYACAG CATPLYKSTT KFDSGCGWPA FFDAIPGAII QTLEPDGKRV
101: EITCAKCDGH LGHVFKGEGF PTATDERHCV NSVSLKFNSS ETSS

Best Arabidopsis Sequence Match ( AT4G21850.1 )
(BLAST)

001: MPTSATAVAP STGSVQKKDQ DWRAILSPEQ FRVLREKGTE NRGKGEYTKL FDDGIYSCAG CATPLYKSTT KFDSGCGWPS FFDAIPGAIK QTPEAGGRRM
101: EITCAACDGH LGHVVKGEGF PTATDERHCV NSVSLKFSEI SSQ

Arabidopsis Description

MSRB9MSRB9 [Source:UniProtKB/TrEMBL;Acc:A0A178V287]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.