CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
nucleus 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88112
EES07255
KXG27287

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04800.1	KXG27287	AT1G22920.1	21798944
AT4G04800.1	EER88112	AT3G47620.1	21798944
AT4G04800.1	EES07255	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P05970_001	Banana	cytosol	50.0	80.15
EER94826	Sorghum	cytosol	46.33	75.37
KRH11321	Soybean	cytosol	47.71	75.36
Solyc01g080410.2.1	Tomato	cytosol	46.33	74.81
VIT_05s0020g02340.t01	Wine grape	cytosol	47.25	74.64
KRH20953	Soybean	cytosol	47.25	74.64
Zm00001d010336_P001	Maize	mitochondrion	72.94	73.27
AT4G04830.1	Thale cress	cytosol	45.41	71.22
CDX94577	Canola	cytosol	43.12	69.12
CDX90878	Canola	cytosol	44.04	67.61
AT4G04810.1	Thale cress	cytosol	42.66	66.91
Bra000806.1-P	Field mustard	cytosol	43.58	66.9
CDY21318	Canola	cytosol	43.58	66.9
CDX76396	Canola	cytosol, plastid	41.74	63.19
CDY27421	Canola	cytosol, plastid	41.74	63.19
Bra020868.1-P	Field mustard	cytosol, plastid	41.74	63.19
AT4G21850.1	Thale cress	cytosol	40.83	62.24
AT4G21830.1	Thale cress	cytosol	40.37	61.11
AT4G21840.1	Thale cress	cytosol	39.91	60.84
Solyc01g106400.2.1	Tomato	plastid	46.33	59.06
Os05t0404200-01	Rice	plasma membrane	61.47	58.52
VIT_00s0282g00010.t01	Wine grape	plastid	51.83	57.36
TraesCS1A01G252400.1	Wheat	mitochondrion, plastid	55.96	56.74
TraesCS1B01G265600.1	Wheat	mitochondrion, plastid	56.88	56.62
PGSC0003DMT400068883	Potato	cytosol	51.38	56.0
Solyc10g047930.1.1	Tomato	plastid	50.46	55.84
CDX79099	Canola	plastid	53.67	55.19
CDX82871	Canola	plastid	50.46	55.0
AT4G21860.1	Thale cress	plastid	50.92	54.95
KRH21686	Soybean	plastid	50.92	54.95
AT4G04800.1	Thale cress	extracellular, plasma membrane, vacuole	44.04	54.55
PGSC0003DMT400008074	Potato	plastid	45.41	54.4
TraesCS1D01G252100.1	Wheat	mitochondrion, plastid	54.13	54.38
Bra013565.1-P	Field mustard	plastid	52.75	53.74
AT4G04840.1	Thale cress	cytosol	37.61	53.59
KRH10659	Soybean	plastid	50.0	53.43
CDY16645	Canola	mitochondrion, plastid	36.24	52.32
Bra038753.1-P	Field mustard	plastid	47.71	50.24
CDX94059	Canola	plastid	48.62	50.24
CDX98708	Canola	plastid	48.62	50.24
EER88155	Sorghum	plastid	30.28	29.86

Protein Annotations

Gene3D:2.170.150.20	MapMan:35.1	EntrezGene:8076880	UniProt:C5YXN9	EnsemblPlants:EES18201	ProteinID:EES18201
ProteinID:EES18201.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005783	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150
GO:GO:0008152	GO:GO:0009628	GO:GO:0009631	GO:GO:0009987	GO:GO:0016671	GO:GO:0019538
GO:GO:0030091	GO:GO:0033743	GO:GO:0034599	GO:GO:0055114	GO:GO:0070191	InterPro:IPR002579
InterPro:Met_Sox_Rdtase	InterPro:Met_Sox_Rdtase_MsrB	InterPro:Mss4-like_sf	PFAM:PF01641	PFscan:PS51790	PANTHER:PTHR10173
PANTHER:PTHR10173:SF52	EnsemblPlantsGene:SORBI_3009G131800	SUPFAM:SSF51316	unigene:Sbi.258	TIGRFAMs:TIGR00357	UniParc:UPI0001A886EE
RefSeq:XP_002439771.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:48531843..48534325

Molecular Weight (calculated)

23149.6 Da

IEP (calculated)

9.778

GRAVY (calculated)

-0.459

Length

218 amino acids

Sequence
(BLAST)

001: MGVQRLLRLR MASHSCSRPP AAALAPRAAR PLSSLLLAPS PSTARPPSAP LSCAARPCRG HAHAAASASR GAAGRRPPSV AAMSSSTPPP GPVQKSEEEW
101: QAILTPEQFN ILRRKGTEYP GTGEYDKFFE EGIYKCAGCG TPLYKSSTKF NSGCGWPAFY EGLPGAIKQT PDPDGRRTEI TCTACGGHLG HIFKGEGFKT
201: PTNERHCVNS ISLKFTPS

Best Arabidopsis Sequence Match ( AT4G21860.3 )
(BLAST)

001: MAFNIITPGR VYSATSLTFV STIKAAFVKP PLASPSRRNL LRFSSSPLSF PSLRRGFHGG RIVAMGSSAP ESVNKPEEEW RAILSPEQFR ILRQKGTEYP
101: GTGEYNKVFD DGIYCCAGCG TPLYKSTTKF DSGCGWPAFF DGLPGAITRT PDPDGRRIEI TCAACGGHLG HVFKGEGFPT PTDERHCVNS ISLKFTPENP
201: TL

Arabidopsis Description

MSRB2Peptide methionine sulfoxide reductase B2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5C8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.