Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G21830.1 | Thale cress | cytosol | 95.8 | 95.14 |
| CDY27421 | Canola | cytosol, plastid | 75.52 | 75.0 |
| Bra020868.1-P | Field mustard | cytosol, plastid | 75.52 | 75.0 |
| CDX76396 | Canola | cytosol, plastid | 75.52 | 75.0 |
| AT4G21850.1 | Thale cress | cytosol | 74.83 | 74.83 |
| AT4G04830.1 | Thale cress | cytosol | 67.13 | 69.06 |
| GSMUA_Achr8P05970_001 | Banana | cytosol | 62.24 | 65.44 |
| AT4G04810.1 | Thale cress | cytosol | 62.94 | 64.75 |
| AT4G04840.1 | Thale cress | cytosol | 63.64 | 59.48 |
| AT4G04800.1 | Thale cress | extracellular, plasma membrane, vacuole | 62.24 | 50.57 |
| Solyc01g106400.2.1 | Tomato | plastid | 60.14 | 50.29 |
| VIT_00s0282g00010.t01 | Wine grape | plastid | 65.03 | 47.21 |
| PGSC0003DMT400008074 | Potato | plastid | 59.44 | 46.7 |
| AT4G21860.1 | Thale cress | plastid | 64.34 | 45.54 |
| PGSC0003DMT400068883 | Potato | cytosol | 62.94 | 45.0 |
| Solyc10g047930.1.1 | Tomato | plastid | 61.54 | 44.67 |
| KRH21686 | Soybean | plastid | 62.94 | 44.55 |
| KRH10659 | Soybean | plastid | 61.54 | 43.14 |
| TraesCS1A01G252400.1 | Wheat | mitochondrion, plastid | 64.34 | 42.79 |
| TraesCS1D01G252100.1 | Wheat | mitochondrion, plastid | 63.64 | 41.94 |
| TraesCS1B01G265600.1 | Wheat | mitochondrion, plastid | 62.94 | 41.1 |
| EES18201 | Sorghum | mitochondrion | 60.84 | 39.91 |
| Os05t0404200-01 | Rice | plasma membrane | 63.64 | 39.74 |
| Zm00001d010336_P001 | Maize | mitochondrion | 60.14 | 39.63 |
| AT1G53670.1 | Thale cress | plastid | 34.27 | 24.26 |
Protein Annotations
| Gene3D:2.170.150.20 | MapMan:35.1 | EntrezGene:828272 | UniProt:A0A178V0W9 | ProteinID:AEE84510.1 | ArrayExpress:AT4G21840 |
| EnsemblPlantsGene:AT4G21840 | RefSeq:AT4G21840 | TAIR:AT4G21840 | RefSeq:AT4G21840-TAIR-G | EnsemblPlants:AT4G21840.1 | TAIR:AT4G21840.1 |
| Symbol:ATMSRB8 | EMBL:AY085310 | ProteinID:CAA17151.1 | ProteinID:CAB79139.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0006950 | GO:GO:0006979 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016491 |
| GO:GO:0016671 | GO:GO:0019538 | GO:GO:0030091 | GO:GO:0033743 | GO:GO:0046872 | GO:GO:0055114 |
| InterPro:IPR002579 | InterPro:Met_Sox_Rdtase | InterPro:Met_Sox_Rdtase_MsrB | InterPro:Mss4-like_sf | RefSeq:NP_193915.1 | UniProt:O49707 |
| ProteinID:OAO99818.1 | PFAM:PF01641 | PO:PO:0000293 | PO:PO:0009005 | PFscan:PS51790 | PANTHER:PTHR10173 |
| PANTHER:PTHR10173:SF52 | SUPFAM:SSF51316 | TIGRFAMs:TIGR00357 | UniParc:UPI000009E636 | : | : |
Description
MSRB8MSRB8 [Source:UniProtKB/TrEMBL;Acc:A0A178V0W9]
Coordinates
chr4:-:11586980..11588373
Molecular Weight (calculated)
15430.2 Da
IEP (calculated)
8.374
GRAVY (calculated)
-0.475
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMTAAAVPS SGSFQKQDEE WRAVLSPEQF RVLRLKGTDK RGKGEFTKKF EEGTYSCAGC GTALYKSTTK FDSGCGWPAF FDAIPGAIKQ TPEAGGRRME
101: ITCAVCDGHL GHVFKGEGYS TPTDQRHCVN SVSLKFASAD SSK
101: ITCAVCDGHL GHVFKGEGYS TPTDQRHCVN SVSLKFASAD SSK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.