Factsheet for Solyc01g106400.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g116320.2.1
Solyc06g073150.2.1
Solyc11g017300.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04800.1	Solyc06g073150.2.1	AT1G22920.1	21798944
AT4G04800.1	Solyc11g017300.1.1	AT1G22920.1	21798944
AT4G04800.1	Solyc03g116320.2.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008074	Potato	plastid	92.4	86.81
GSMUA_Achr8P05970_001	Banana	cytosol	59.65	75.0
Solyc01g080410.2.1	Tomato	cytosol	58.48	74.07
AT4G04830.1	Thale cress	cytosol	54.39	66.91
CDX94577	Canola	cytosol	52.05	65.44
CDX90878	Canola	cytosol	53.8	64.79
Bra000806.1-P	Field mustard	cytosol	53.22	64.08
CDY21318	Canola	cytosol	53.22	64.08
AT4G04810.1	Thale cress	cytosol	52.05	64.03
AT4G21830.1	Thale cress	cytosol	50.88	60.42
Bra020868.1-P	Field mustard	cytosol, plastid	50.88	60.42
CDY27421	Canola	cytosol, plastid	50.88	60.42
CDX76396	Canola	cytosol, plastid	50.88	60.42
AT4G21840.1	Thale cress	cytosol	50.29	60.14
AT4G21850.1	Thale cress	cytosol	50.29	60.14
AT4G04800.1	Thale cress	extracellular, plasma membrane, vacuole	54.97	53.41
VIT_00s0282g00010.t01	Wine grape	plastid	61.4	53.3
CDX82871	Canola	plastid	61.4	52.5
KRH21686	Soybean	plastid	61.4	51.98
AT4G04840.1	Thale cress	cytosol	46.2	51.63
KRH10659	Soybean	plastid	61.4	51.47
Solyc10g047930.1.1	Tomato	plastid	59.06	51.27
AT4G21860.1	Thale cress	plastid	59.65	50.49
Bra038753.1-P	Field mustard	plastid	60.23	49.76
CDX79099	Canola	plastid	60.82	49.06
CDX98708	Canola	plastid	60.23	48.82
CDX94059	Canola	plastid	60.23	48.82
Bra013565.1-P	Field mustard	plastid	60.82	48.6
EES18201	Sorghum	mitochondrion	59.06	46.33
TraesCS1A01G252400.1	Wheat	mitochondrion, plastid	57.89	46.05
CDY16645	Canola	mitochondrion, plastid	40.35	45.7
TraesCS1D01G252100.1	Wheat	mitochondrion, plastid	57.89	45.62
Zm00001d010336_P001	Maize	mitochondrion	57.89	45.62
Os05t0404200-01	Rice	plasma membrane	60.82	45.41
TraesCS1B01G265600.1	Wheat	mitochondrion, plastid	57.31	44.75
Solyc07g062060.2.1	Tomato	plastid	33.33	38.51

Protein Annotations

Gene3D:2.170.150.20	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006950	GO:GO:0006979
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016671	GO:GO:0019538	GO:GO:0030091
GO:GO:0033743	GO:GO:0055114	InterPro:IPR002579	UniProt:K4B2K8	InterPro:Met_Sox_Rdtase	InterPro:Met_Sox_Rdtase_MsrB
InterPro:Mss4-like_sf	PFAM:PF01641	PFscan:PS51790	PANTHER:PTHR10173	PANTHER:PTHR10173:SF52	SUPFAM:SSF51316
EnsemblPlantsGene:Solyc01g106400.2	EnsemblPlants:Solyc01g106400.2.1	TIGRFAMs:TIGR00357	UniParc:UPI00027676F3	:	:

Description

Peptide methionine sulfoxide reductase B2, chloroplastic [Source:Projected from Arabidopsis thaliana (AT4G21860) UniProtKB/Swiss-Prot;Acc:Q9C5C8]

Coordinates

chr1:+:94309252..94310307

Molecular Weight (calculated)

19064.8 Da

IEP (calculated)

9.798

GRAVY (calculated)

-0.414

Length

171 amino acids

Sequence
(BLAST)

001: MDSQILKFWP IIPSKNLIFN SKKAVPIRGL SNTRFRVAAA GSVQKSEEEW RAILSPDQFR ILRQKGTETQ GSGEYNKFFG VGTYLCAGCG TPLYRSATKF
101: NSPCGWPSFY EGLPGAINRN PDPDGIRMEI TCAACGGHLG HVFKGEWFRT PTNERHCVNS ISLKFKPPQF S

Best Arabidopsis Sequence Match ( AT4G21860.3 )
(BLAST)

001: MAFNIITPGR VYSATSLTFV STIKAAFVKP PLASPSRRNL LRFSSSPLSF PSLRRGFHGG RIVAMGSSAP ESVNKPEEEW RAILSPEQFR ILRQKGTEYP
101: GTGEYNKVFD DGIYCCAGCG TPLYKSTTKF DSGCGWPAFF DGLPGAITRT PDPDGRRIEI TCAACGGHLG HVFKGEGFPT PTDERHCVNS ISLKFTPENP
201: TL

Arabidopsis Description

MSRB2Peptide methionine sulfoxide reductase B2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5C8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.