Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- nucleus 2
- cytosol 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g116320.2.1 | |
| Solyc06g073150.2.1 | |
| Solyc11g017300.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G04800.1 | Solyc06g073150.2.1 | AT1G22920.1 | 21798944 |
| AT4G04800.1 | Solyc11g017300.1.1 | AT1G22920.1 | 21798944 |
| AT4G04800.1 | Solyc03g116320.2.1 | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P05970_001 | Banana | cytosol | 56.85 | 82.35 |
| Solyc01g080410.2.1 | Tomato | cytosol | 54.31 | 79.26 |
| AT4G04830.1 | Thale cress | cytosol | 54.31 | 76.98 |
| CDX94577 | Canola | cytosol | 52.79 | 76.47 |
| PGSC0003DMT400068883 | Potato | cytosol | 73.6 | 72.5 |
| AT4G04810.1 | Thale cress | cytosol | 50.76 | 71.94 |
| CDY21318 | Canola | cytosol | 51.78 | 71.83 |
| Bra000806.1-P | Field mustard | cytosol | 51.27 | 71.13 |
| CDX90878 | Canola | cytosol | 51.27 | 71.13 |
| AT4G04800.1 | Thale cress | extracellular, plasma membrane, vacuole | 58.38 | 65.34 |
| Bra020868.1-P | Field mustard | cytosol, plastid | 47.72 | 65.28 |
| CDX76396 | Canola | cytosol, plastid | 47.72 | 65.28 |
| CDY27421 | Canola | cytosol, plastid | 47.72 | 65.28 |
| AT4G21850.1 | Thale cress | cytosol | 47.21 | 65.03 |
| VIT_00s0282g00010.t01 | Wine grape | plastid | 61.93 | 61.93 |
| AT4G21830.1 | Thale cress | cytosol | 45.18 | 61.81 |
| AT4G21840.1 | Thale cress | cytosol | 44.67 | 61.54 |
| KRH21686 | Soybean | plastid | 62.94 | 61.39 |
| KRH10659 | Soybean | plastid | 61.93 | 59.8 |
| Solyc01g106400.2.1 | Tomato | plastid | 51.27 | 59.06 |
| AT4G04840.1 | Thale cress | cytosol | 45.18 | 58.17 |
| AT4G21860.1 | Thale cress | plastid | 59.39 | 57.92 |
| CDX82871 | Canola | plastid | 58.38 | 57.5 |
| Bra038753.1-P | Field mustard | plastid | 59.9 | 57.0 |
| CDY16645 | Canola | mitochondrion, plastid | 43.15 | 56.29 |
| CDX94059 | Canola | plastid | 59.9 | 55.92 |
| CDX79099 | Canola | plastid | 59.39 | 55.19 |
| Bra013565.1-P | Field mustard | plastid | 59.9 | 55.14 |
| CDX98708 | Canola | plastid | 58.88 | 54.98 |
| TraesCS1A01G252400.1 | Wheat | mitochondrion, plastid | 58.38 | 53.49 |
| TraesCS1D01G252100.1 | Wheat | mitochondrion, plastid | 56.85 | 51.61 |
| Os05t0404200-01 | Rice | plasma membrane | 58.88 | 50.66 |
| EES18201 | Sorghum | mitochondrion | 55.84 | 50.46 |
| TraesCS1B01G265600.1 | Wheat | mitochondrion, plastid | 55.33 | 49.77 |
| Zm00001d010336_P001 | Maize | mitochondrion | 53.81 | 48.85 |
| Solyc07g062060.2.1 | Tomato | plastid | 28.93 | 38.51 |
Protein Annotations
| Gene3D:2.170.150.20 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0006950 | GO:GO:0006979 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009628 | GO:GO:0009631 | GO:GO:0009987 | GO:GO:0016671 |
| GO:GO:0019538 | GO:GO:0030091 | GO:GO:0033743 | GO:GO:0034599 | GO:GO:0055114 | GO:GO:0070191 |
| InterPro:IPR002579 | UniProt:K4D052 | InterPro:Met_Sox_Rdtase | InterPro:Met_Sox_Rdtase_MsrB | InterPro:Mss4-like_sf | PFAM:PF01641 |
| PFscan:PS51790 | PANTHER:PTHR10173 | PANTHER:PTHR10173:SF52 | SUPFAM:SSF51316 | EnsemblPlantsGene:Solyc10g047930.1 | EnsemblPlants:Solyc10g047930.1.1 |
| TIGRFAMs:TIGR00357 | UniParc:UPI0001CB0F93 | SEG:seg | : | : | : |
Description
Peptide methionine sulfoxide reductase B3 [Source:Projected from Arabidopsis thaliana (AT4G04800) UniProtKB/Swiss-Prot;Acc:Q9M0Z6]
Coordinates
chr10:+:43114966..43119944
Molecular Weight (calculated)
21289.1 Da
IEP (calculated)
9.113
GRAVY (calculated)
-0.365
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSHILKISP FASSTPLFIN ATPFLRFQAK KVVSICGHPK TQFRFSSSSS SSSKRGFRGG VVAMAAPDSV HKSEEDWRAI LSPEQFRILR QKGTEYPGTG
101: EYDKFSGEGV YQCAGCSTPL YKSTAKFNSG CGWPAFFEGL PGAINRTPDP DGRRVEITCA ACGGHLGHVF KGEGFPTPTD ERHCVNSVSL KFTPANS
101: EYDKFSGEGV YQCAGCSTPL YKSTAKFNSG CGWPAFFEGL PGAINRTPDP DGRRVEITCA ACGGHLGHVF KGEGFPTPTD ERHCVNSVSL KFTPANS
001: MAFNIITPGR VYSATSLTFV STIKAAFVKP PLASPSRRNL LRFSSSPLSF PSLRRGFHGG RIVAMGSSAP ESVNKPEEEW RAILSPEQFR ILRQKGTEYP
101: GTGEYNKVFD DGIYCCAGCG TPLYKSTTKF DSGCGWPAFF DGLPGAITRT PDPDGRRIEI TCAACGGHLG HVFKGEGFPT PTDERHCVNS ISLKFTPENP
201: TL
101: GTGEYNKVFD DGIYCCAGCG TPLYKSTTKF DSGCGWPAFF DGLPGAITRT PDPDGRRIEI TCAACGGHLG HVFKGEGFPT PTDERHCVNS ISLKFTPENP
201: TL
Arabidopsis Description
MSRB2Peptide methionine sulfoxide reductase B2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5C8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.