Factsheet for Solyc07g062060.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

plastid: 20363867
plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018250	Potato	cytosol	96.62	96.62
GSMUA_Achr6P13640_001	Banana	cytosol	83.78	83.78
VIT_19s0014g00170.t01	Wine grape	plastid	87.16	65.15
TraesCS7D01G343600.2	Wheat	plastid	77.03	57.87
TraesCS7B01G247500.2	Wheat	plastid	77.03	57.87
Bra039683.1-P	Field mustard	plastid	79.73	57.84
CDY24080	Canola	plastid	79.73	57.84
CDY45127	Canola	plastid	79.73	57.84
KRH44863	Soybean	plastid	75.68	55.45
AT1G53670.1	Thale cress	plastid	73.65	53.96
Os06t0472000-01	Rice	plastid	76.35	53.3
Zm00001d037273_P001	Maize	plastid	72.97	51.67
HORVU7Hr1G082710.2	Barley	plastid	77.03	49.35
EER88155	Sorghum	plastid	72.97	48.87
Solyc01g080410.2.1	Tomato	cytosol	37.84	41.48
Solyc01g106400.2.1	Tomato	plastid	38.51	33.33
Solyc10g047930.1.1	Tomato	plastid	38.51	28.93

Protein Annotations

Gene3D:2.170.150.20	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016671	GO:GO:0019538	GO:GO:0030091
GO:GO:0033743	GO:GO:0055114	InterPro:IPR002579	UniProt:K4CGN9	InterPro:Met_Sox_Rdtase	InterPro:Met_Sox_Rdtase_MsrB
InterPro:Mss4-like_sf	PFAM:PF01641	PFscan:PS51790	PANTHER:PTHR10173	PANTHER:PTHR10173:SF37	SUPFAM:SSF51316
EnsemblPlantsGene:Solyc07g062060.2	EnsemblPlants:Solyc07g062060.2.1	TIGRFAMs:TIGR00357	UniParc:UPI0001CB0F92	SEG:seg	:

Description

No Description!

Coordinates

chr7:-:64890896..64893777

Molecular Weight (calculated)

16478.2 Da

IEP (calculated)

7.785

GRAVY (calculated)

-0.688

Length

148 amino acids

Sequence
(BLAST)

001: MGSSASSSKS DSVQGGSKMD YSSISDEEWK KKLTNEQFYI TRQKGTERAF TGEYWNSKTP GTYHCICCDT PLFESSTKFD SGTGWPSYYQ PIDNNVKSKM
101: DLSIIFMPRQ EVLCAACDAH LGHVFDDGPP PTGKRYCINS ASLKLKAK

Best Arabidopsis Sequence Match ( AT1G53670.1 )
(BLAST)

001: MASSTRLTII QSSFVSARTR LNYVSKTNHS GFACRSLSKP RNLSLSVYSM GSSSSSPKPD NVQEAEKNEF ASLSENEWKK RLTPEQYYIT RQKGTERAFT
101: GEYWNSKTPG VYNCVCCDTP LFDSSTKFDS GTGWPSYYQP IGNNVKTKLD LSIIFMPRQE VVCAVCNAHL GHVFDDGPRP TGKRYCLNSA ALKLNALEKT
201: RD

Arabidopsis Description

MSRB1Peptide methionine sulfoxide reductase B1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C8M2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.