Factsheet for Zm00001d037273_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P13640_001	Banana	cytosol	56.46	79.73
PGSC0003DMT400018250	Potato	cytosol	52.63	74.32
Solyc07g062060.2.1	Tomato	plastid	51.67	72.97
VIT_19s0014g00170.t01	Wine grape	plastid	59.33	62.63
TraesCS7B01G247500.2	Wheat	plastid	57.89	61.42
TraesCS7D01G343600.2	Wheat	plastid	57.42	60.91
Os06t0472000-01	Rice	plastid	61.24	60.38
EER88155	Sorghum	plastid	59.81	56.56
AT1G53670.1	Thale cress	plastid	54.55	56.44
KRH44863	Soybean	plastid	53.59	55.45
Bra039683.1-P	Field mustard	plastid	53.11	54.41
CDY24080	Canola	plastid	53.11	54.41
CDY45127	Canola	plastid	53.11	54.41
HORVU7Hr1G082710.2	Barley	plastid	56.46	51.08
Zm00001d029238_P001	Maize	cytosol	25.36	39.26
Zm00001d010336_P001	Maize	mitochondrion	32.54	31.34

Protein Annotations

EntrezGene:100282023	Gene3D:2.170.150.20	MapMan:35.1	ProteinID:AQK83465.1	UniProt:B6T2N3	EMBL:EU959248
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	GO:GO:0009987	GO:GO:0016671	GO:GO:0019538	GO:GO:0030091	GO:GO:0033743
GO:GO:0055114	InterPro:IPR002579	HAMAP:MF_01400	InterPro:Met_Sox_Rdtase	InterPro:Met_Sox_Rdtase_MsrB	InterPro:Mss4-like_sf
PFAM:PF01641	PFscan:PS51790	PANTHER:PTHR10173	PANTHER:PTHR10173:SF37	SUPFAM:SSF51316	TIGRFAMs:TIGR00357
UniParc:UPI000182C707	EnsemblPlantsGene:Zm00001d037273	EnsemblPlants:Zm00001d037273_P001	EnsemblPlants:Zm00001d037273_T001	SEG:seg	:

Description

Peptide methionine sulfoxide reductase msrB

Coordinates

chr6:+:119043969..119047721

Molecular Weight (calculated)

22831.0 Da

IEP (calculated)

9.096

GRAVY (calculated)

-0.507

Length

209 amino acids

Sequence
(BLAST)

001: MAARCSTAAS VVRTGSRDLS PSFSFTAAAL PSARLRPVGA WVRGGGYTCR LRAVCAMGSA PSSSQSPSPH TPSGQTQGKA DYKSLSEEEW KKRLTEEQYY
101: VTRQKGTERA FTGEYWNTKT PGIYQCVCCD TPLFQSSTKF DSGTGWPSYY KPIGENVKSK LDMSIIFMPR TEVLCATCDA HLGHVFDDGP PPTGKRYCIN
201: SASLKLKPQ

Best Arabidopsis Sequence Match ( AT1G53670.1 )
(BLAST)

001: MASSTRLTII QSSFVSARTR LNYVSKTNHS GFACRSLSKP RNLSLSVYSM GSSSSSPKPD NVQEAEKNEF ASLSENEWKK RLTPEQYYIT RQKGTERAFT
101: GEYWNSKTPG VYNCVCCDTP LFDSSTKFDS GTGWPSYYQP IGNNVKTKLD LSIIFMPRQE VVCAVCNAHL GHVFDDGPRP TGKRYCLNSA ALKLNALEKT
201: RD

Arabidopsis Description

MSRB1Peptide methionine sulfoxide reductase B1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C8M2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.