Factsheet for Os06t0472000-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 19415325

gfp PMID: 19415325 doi

X Guo, Y Wu, Y Wang, Y Chen, C Chu

State Key Laboratory of Plant Genomics, National Centre for Plant Gene Research (Beijing), Institute of Genetics and Developmental Biology, Chinese Academy of Sciences (CAS), 100101 Beijing, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P13640_001	Banana	cytosol	56.13	80.41
Solyc07g062060.2.1	Tomato	plastid	53.3	76.35
PGSC0003DMT400018250	Potato	cytosol	52.83	75.68
TraesCS7B01G247500.2	Wheat	plastid	59.43	63.96
TraesCS7D01G343600.2	Wheat	plastid	58.49	62.94
Zm00001d037273_P001	Maize	plastid	60.38	61.24
VIT_19s0014g00170.t01	Wine grape	plastid	56.6	60.61
Bra039683.1-P	Field mustard	plastid	56.13	58.33
CDY24080	Canola	plastid	56.13	58.33
CDY45127	Canola	plastid	55.66	57.84
KRH44863	Soybean	plastid	54.25	56.93
EER88155	Sorghum	plastid	58.49	56.11
AT1G53670.1	Thale cress	plastid	53.3	55.94
HORVU7Hr1G082710.2	Barley	plastid	58.96	54.11
Os03t0360700-01	Rice	plasma membrane, plastid	26.89	41.91
Os05t0404200-01	Rice	plasma membrane	29.72	27.51

Protein Annotations

Gene3D:2.170.150.20	MapMan:35.1	UniProt:A0A0P0WWR9	ProteinID:BAS97741.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006950
GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009987	GO:GO:0016491	GO:GO:0016671	GO:GO:0019538	GO:GO:0030091	GO:GO:0033743
GO:GO:0046872	GO:GO:0055114	InterPro:IPR002579	InterPro:Met_Sox_Rdtase	InterPro:Met_Sox_Rdtase_MsrB	InterPro:Mss4-like_sf
EnsemblPlantsGene:Os06g0472000	EnsemblPlants:Os06t0472000-01	PFAM:PF01641	PFscan:PS51790	PANTHER:PTHR10173	PANTHER:PTHR10173:SF37
SUPFAM:SSF51316	TIGRFAMs:TIGR00357	UniParc:UPI0000E127DD	SEG:seg	:	:

Description

Methionine sulfoxide reductase B1, Methionine sulfoxide reductase B1.1, peptide methionine sulfoxide reductaseMethionine sulphoxide reductase B domain containing protein. (Os06t0472000-01);Hypothetical gene. (Os06t0472000-02)

Coordinates

chr6:-:15718546..15721230

Molecular Weight (calculated)

23221.3 Da

IEP (calculated)

9.559

GRAVY (calculated)

-0.552

Length

212 amino acids

Sequence
(BLAST)

001: MRQYAAATAA SSSFRARPRA RPSCLPAAAL PLAPCCGVAW SRASYRRASV RAMGAASSSS SSSSSSPSPQ GQAQAQAQGK PNYSTSLTDE EWRKRLTKDQ
101: YYITRQKGTE RAFTGEYWNT KTPGIYHCVC CDTPLFESST KFDSGTGWPS YYQPIGDNVK CKLDMSIIFM PRTEVLCAVC DAHLGHVFDD GPRPTGKRYC
201: INSASLKLKK TQ

Best Arabidopsis Sequence Match ( AT1G53670.1 )
(BLAST)

001: MASSTRLTII QSSFVSARTR LNYVSKTNHS GFACRSLSKP RNLSLSVYSM GSSSSSPKPD NVQEAEKNEF ASLSENEWKK RLTPEQYYIT RQKGTERAFT
101: GEYWNSKTPG VYNCVCCDTP LFDSSTKFDS GTGWPSYYQP IGNNVKTKLD LSIIFMPRQE VVCAVCNAHL GHVFDDGPRP TGKRYCLNSA ALKLNALEKT
201: RD

Arabidopsis Description

MSRB1Peptide methionine sulfoxide reductase B1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C8M2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.