CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039683.1-P	Field mustard	plastid	100.0	100.0
CDY45127	Canola	plastid	98.04	98.04
Solyc07g062060.2.1	Tomato	plastid	57.84	79.73
GSMUA_Achr6P13640_001	Banana	cytosol	57.35	79.05
PGSC0003DMT400018250	Potato	cytosol	56.86	78.38
VIT_19s0014g00170.t01	Wine grape	plastid	61.76	63.64
AT1G53670.1	Thale cress	plastid	62.25	62.87
TraesCS7B01G247500.2	Wheat	plastid	57.35	59.39
TraesCS7D01G343600.2	Wheat	plastid	56.86	58.88
Os06t0472000-01	Rice	plastid	58.33	56.13
KRH44863	Soybean	plastid	54.41	54.95
Zm00001d037273_P001	Maize	plastid	54.41	53.11
EER88155	Sorghum	plastid	53.43	49.32
HORVU7Hr1G082710.2	Barley	plastid	55.39	48.92
CDX94577	Canola	cytosol	25.0	37.5
CDX90878	Canola	cytosol	25.49	36.62
CDY21318	Canola	cytosol	25.0	35.92
CDX76396	Canola	cytosol, plastid	24.51	34.72
CDY27421	Canola	cytosol, plastid	24.51	34.72
CDY16645	Canola	mitochondrion, plastid	22.55	30.46
CDX82871	Canola	plastid	29.41	30.0
CDX98708	Canola	plastid	29.41	28.44
CDX94059	Canola	plastid	29.41	28.44
CDX79099	Canola	plastid	28.92	27.83

Protein Annotations

Gene3D:2.170.150.20	MapMan:35.1	GO:A0A078GC86	UniProt:A0A078GC86	EnsemblPlants:CDY24080	ProteinID:CDY24080
ProteinID:CDY24080.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016671	GO:GO:0019538	GO:GO:0030091	GO:GO:0033743
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00024623001	InterPro:IPR002579	InterPro:Met_Sox_Rdtase	InterPro:Met_Sox_Rdtase_MsrB	InterPro:Mss4-like_sf
PFAM:PF01641	PFscan:PS51790	PANTHER:PTHR10173	PANTHER:PTHR10173:SF37	SUPFAM:SSF51316	TIGRFAMs:TIGR00357
UniParc:UPI000253E785	:	:	:	:	:

Description

BnaA06g00780DBnaA06g00780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GC86]

Coordinates

chrLK032153:+:320746..322301

Molecular Weight (calculated)

22818.0 Da

IEP (calculated)

9.120

GRAVY (calculated)

-0.485

Length

204 amino acids

Sequence
(BLAST)

001: MASSSCFTIQ SRFVSARTKL DSISKPSLSG FACRSLTKPR NLNLSVLLRC SMGSFNSSQK SDNVQEAAKS DFASISEGEW KKRLTPEQYY ITRQKGTERA
101: FTGEYWNTKT PGVYKCICCD TPLFDSSTKF DSGTGWPSYY QPIGNNVKSK LDLSIIFMPR QEVICAVCNA HLGHVFDDGP RPTGKRYCLN SAALKLESLE
201: RTRE

Best Arabidopsis Sequence Match ( AT1G53670.1 )
(BLAST)

001: MASSTRLTII QSSFVSARTR LNYVSKTNHS GFACRSLSKP RNLSLSVYSM GSSSSSPKPD NVQEAEKNEF ASLSENEWKK RLTPEQYYIT RQKGTERAFT
101: GEYWNSKTPG VYNCVCCDTP LFDSSTKFDS GTGWPSYYQP IGNNVKTKLD LSIIFMPRQE VVCAVCNAHL GHVFDDGPRP TGKRYCLNSA ALKLNALEKT
201: RD

Arabidopsis Description

MSRB1Peptide methionine sulfoxide reductase B1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C8M2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.