CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018250	Potato	cytosol	56.44	77.03
Solyc07g062060.2.1	Tomato	plastid	55.45	75.68
GSMUA_Achr6P13640_001	Banana	cytosol	54.95	75.0
VIT_19s0014g00170.t01	Wine grape	plastid	59.9	61.11
TraesCS7B01G247500.2	Wheat	plastid	55.94	57.36
TraesCS7D01G343600.2	Wheat	plastid	55.45	56.85
EER88155	Sorghum	plastid	60.4	55.2
Bra039683.1-P	Field mustard	plastid	54.95	54.41
CDY24080	Canola	plastid	54.95	54.41
Os06t0472000-01	Rice	plastid	56.93	54.25
AT1G53670.1	Thale cress	plastid	53.96	53.96
CDY45127	Canola	plastid	54.46	53.92
Zm00001d037273_P001	Maize	plastid	55.45	53.59
HORVU7Hr1G082710.2	Barley	plastid	56.44	49.35
KRH20953	Soybean	cytosol	27.72	40.58
KRH11321	Soybean	cytosol	27.72	40.58
KRH21686	Soybean	plastid	29.7	29.7
KRH10659	Soybean	plastid	29.7	29.41

Protein Annotations

EntrezGene:100798757	Gene3D:2.170.150.20	MapMan:35.1	EMBL:ACUP02004971	EMBL:BT096325	UniProt:C6TFD8
EnsemblPlantsGene:GLYMA_08G236000	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016671	GO:GO:0019538	GO:GO:0030091
GO:GO:0033743	GO:GO:0055114	InterPro:IPR002579	EnsemblPlants:KRH44863	ProteinID:KRH44863	ProteinID:KRH44863.1
InterPro:Met_Sox_Rdtase	InterPro:Met_Sox_Rdtase_MsrB	InterPro:Mss4-like_sf	PFAM:PF01641	PFscan:PS51790	PANTHER:PTHR10173
PANTHER:PTHR10173:SF37	SUPFAM:SSF51316	TIGRFAMs:TIGR00357	UniParc:UPI0001B16616	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:-:19945089..19949067

Molecular Weight (calculated)

22647.9 Da

IEP (calculated)

8.839

GRAVY (calculated)

-0.503

Length

202 amino acids

Sequence
(BLAST)

001: MASQSLSLPP THIPYNRIIG KLDSKFLLWP SCAHIKPRRI STSIRAMGSS ASSHSQSQYA DSVESEAGAD TIDYKSLTDE EWKKRLTNEQ FYITRQKGTE
101: RAFTGEYWNT KTPGIYHCIC CDTPLFESST KFNSGTGWPS YYQTIGKNVK SKLDLSIIFM PRQEVLCAVC DAHLGHVFDD GPPPTGKRFC INSAALKLKP
201: KQ

Best Arabidopsis Sequence Match ( AT1G53670.1 )
(BLAST)

001: MASSTRLTII QSSFVSARTR LNYVSKTNHS GFACRSLSKP RNLSLSVYSM GSSSSSPKPD NVQEAEKNEF ASLSENEWKK RLTPEQYYIT RQKGTERAFT
101: GEYWNSKTPG VYNCVCCDTP LFDSSTKFDS GTGWPSYYQP IGNNVKTKLD LSIIFMPRQE VVCAVCNAHL GHVFDDGPRP TGKRYCLNSA ALKLNALEKT
201: RD

Arabidopsis Description

MSRB1Peptide methionine sulfoxide reductase B1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C8M2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.