Factsheet for Zm00001d010336_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002027_P002
Zm00001d018045_P001
Zm00001d037221_P001
Zm00001d044836_P001
Zm00001d052256_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04800.1	Zm00001d002027_P002	AT1G22920.1	21798944
AT4G04800.1	Zm00001d018045_P001	AT3G47620.1	21798944
AT4G04800.1	Zm00001d037221_P001	AT3G47620.1	21798944
AT4G04800.1	Zm00001d044836_P001	AT3G47620.1	21798944
AT4G04800.1	Zm00001d052256_P001	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P05970_001	Banana	cytosol	49.31	78.68
VIT_05s0020g02340.t01	Wine grape	cytosol	47.93	75.36
KRH11321	Soybean	cytosol	47.93	75.36
Solyc01g080410.2.1	Tomato	cytosol	46.54	74.81
KRH20953	Soybean	cytosol	47.47	74.64
Zm00001d029238_P001	Maize	cytosol	45.62	73.33
EES18201	Sorghum	mitochondrion	73.27	72.94
AT4G04830.1	Thale cress	cytosol	46.08	71.94
CDX94577	Canola	cytosol	43.32	69.12
CDX90878	Canola	cytosol	44.7	68.31
Bra000806.1-P	Field mustard	cytosol	44.24	67.61
CDY21318	Canola	cytosol	44.24	67.61
AT4G04810.1	Thale cress	cytosol	42.86	66.91
CDX76396	Canola	cytosol, plastid	42.4	63.89
Bra020868.1-P	Field mustard	cytosol, plastid	42.4	63.89
CDY27421	Canola	cytosol, plastid	42.4	63.89
AT4G21850.1	Thale cress	cytosol	40.09	60.84
AT4G21840.1	Thale cress	cytosol	39.63	60.14
AT4G21830.1	Thale cress	cytosol	39.63	59.72
VIT_00s0282g00010.t01	Wine grape	plastid	53.0	58.38
Solyc01g106400.2.1	Tomato	plastid	45.62	57.89
TraesCS1A01G252400.1	Wheat	mitochondrion, plastid	57.14	57.67
TraesCS1D01G252100.1	Wheat	mitochondrion, plastid	57.14	57.14
Os05t0404200-01	Rice	plasma membrane	58.99	55.9
AT4G04800.1	Thale cress	extracellular, plasma membrane, vacuole	45.16	55.68
CDX82871	Canola	plastid	50.69	55.0
PGSC0003DMT400068883	Potato	cytosol	50.69	55.0
KRH21686	Soybean	plastid	50.69	54.46
TraesCS1B01G265600.1	Wheat	mitochondrion, plastid	54.84	54.34
CDX79099	Canola	plastid	53.0	54.25
Bra013565.1-P	Field mustard	plastid	53.46	54.21
Solyc10g047930.1.1	Tomato	plastid	48.85	53.81
AT4G04840.1	Thale cress	cytosol	37.79	53.59
KRH10659	Soybean	plastid	50.23	53.43
AT4G21860.1	Thale cress	plastid	49.31	52.97
PGSC0003DMT400008074	Potato	plastid	44.24	52.75
Bra038753.1-P	Field mustard	plastid	48.39	50.72
CDX98708	Canola	plastid	49.31	50.71
CDX94059	Canola	plastid	49.31	50.71
CDY16645	Canola	mitochondrion, plastid	35.02	50.33
Zm00001d037273_P001	Maize	plastid	31.34	32.54

Protein Annotations

Gene3D:2.170.150.20	MapMan:35.1	UniProt:A0A1D6FQJ4	ProteinID:AQK93893.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016671
GO:GO:0019538	GO:GO:0030091	GO:GO:0033743	GO:GO:0055114	InterPro:IPR002579	InterPro:Met_Sox_Rdtase
InterPro:Met_Sox_Rdtase_MsrB	InterPro:Mss4-like_sf	PFAM:PF01641	PFscan:PS51790	PANTHER:PTHR10173	PANTHER:PTHR10173:SF52
SUPFAM:SSF51316	TIGRFAMs:TIGR00357	UniParc:UPI0008449806	EnsemblPlantsGene:Zm00001d010336	EnsemblPlants:Zm00001d010336_P001	EnsemblPlants:Zm00001d010336_T001
SEG:seg	:	:	:	:	:

Description

methionine sulfoxide reductase b2Peptide methionine sulfoxide reductase B3

Coordinates

chr8:+:110250082..110255517

Molecular Weight (calculated)

23120.5 Da

IEP (calculated)

8.628

GRAVY (calculated)

-0.382

Length

217 amino acids

Sequence
(BLAST)

001: MCVQRLLRLR MASRSCSRCA ALAPHAALPL SSLLAPSPSA ARPRSAPLSC AARPCRGHAA ASALHGAAGR RPPSVAAMSS STPPPGSVQK SEEEWEAILT
101: PEQFNILRLK GTEYPGTGEY DKFFEEGIYK CAGCGTPLYK SSTKFNSGCG WPAFYEGLPG AIRQTPDPDG RRTEITCTAC GGHLGHIFKG EGFKTPTNER
201: HCVNSISLKF NPSPEEA

Best Arabidopsis Sequence Match ( AT4G21860.3 )
(BLAST)

001: MAFNIITPGR VYSATSLTFV STIKAAFVKP PLASPSRRNL LRFSSSPLSF PSLRRGFHGG RIVAMGSSAP ESVNKPEEEW RAILSPEQFR ILRQKGTEYP
101: GTGEYNKVFD DGIYCCAGCG TPLYKSTTKF DSGCGWPAFF DGLPGAITRT PDPDGRRIEI TCAACGGHLG HVFKGEGFPT PTDERHCVNS ISLKFTPENP
201: TL

Arabidopsis Description

MSRB2Peptide methionine sulfoxide reductase B2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5C8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.