Factsheet for PGSC0003DMT400008074

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 2
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001613
PGSC0003DMT400023896
PGSC0003DMT400069203

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04800.1	PGSC0003DMT400023896	AT1G22920.1	21798944
AT4G04800.1	PGSC0003DMT400069203	AT1G22920.1	21798944
AT4G04800.1	PGSC0003DMT400001613	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g106400.2.1	Tomato	plastid	86.81	92.4
GSMUA_Achr8P05970_001	Banana	cytosol	54.95	73.53
AT4G04830.1	Thale cress	cytosol	51.1	66.91
CDX94577	Canola	cytosol	48.9	65.44
CDY21318	Canola	cytosol	49.45	63.38
CDX90878	Canola	cytosol	49.45	63.38
AT4G04810.1	Thale cress	cytosol	48.35	63.31
Bra000806.1-P	Field mustard	cytosol	48.9	62.68
CDY27421	Canola	cytosol, plastid	47.25	59.72
AT4G21830.1	Thale cress	cytosol	47.25	59.72
CDX76396	Canola	cytosol, plastid	47.25	59.72
Bra020868.1-P	Field mustard	cytosol, plastid	47.25	59.72
AT4G21840.1	Thale cress	cytosol	46.7	59.44
AT4G21850.1	Thale cress	cytosol	46.15	58.74
VIT_00s0282g00010.t01	Wine grape	plastid	57.14	52.79
AT4G04800.1	Thale cress	extracellular, plasma membrane, vacuole	50.55	52.27
KRH21686	Soybean	plastid	57.69	51.98
AT4G04840.1	Thale cress	cytosol	43.41	51.63
CDX82871	Canola	plastid	56.59	51.5
KRH10659	Soybean	plastid	56.59	50.49
PGSC0003DMT400068883	Potato	cytosol	54.4	49.5
AT4G21860.1	Thale cress	plastid	54.4	49.01
CDX79099	Canola	plastid	56.04	48.11
CDX94059	Canola	plastid	55.49	47.87
Bra038753.1-P	Field mustard	plastid	54.4	47.83
Bra013565.1-P	Field mustard	plastid	56.04	47.66
CDX98708	Canola	plastid	54.4	46.92
TraesCS1A01G252400.1	Wheat	mitochondrion, plastid	54.4	46.05
TraesCS1D01G252100.1	Wheat	mitochondrion, plastid	54.4	45.62
EES18201	Sorghum	mitochondrion	54.4	45.41
TraesCS1B01G265600.1	Wheat	mitochondrion, plastid	53.85	44.75
CDY16645	Canola	mitochondrion, plastid	36.81	44.37
Zm00001d010336_P001	Maize	mitochondrion	52.75	44.24
Os05t0404200-01	Rice	plasma membrane	55.49	44.1
PGSC0003DMT400018250	Potato	cytosol	30.77	37.84

Protein Annotations

EntrezGene:102601102	Gene3D:2.170.150.20	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006950
GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016671	GO:GO:0019538
GO:GO:0030091	GO:GO:0033743	GO:GO:0055114	InterPro:IPR002579	UniProt:M0ZU04	InterPro:Met_Sox_Rdtase
InterPro:Met_Sox_Rdtase_MsrB	InterPro:Mss4-like_sf	PFAM:PF01641	EnsemblPlantsGene:PGSC0003DMG400003115	PGSC:PGSC0003DMG400003115	EnsemblPlants:PGSC0003DMT400008074
PFscan:PS51790	PANTHER:PTHR10173	PANTHER:PTHR10173:SF52	SUPFAM:SSF51316	UniParc:UPI0002968449	:

Description

Chloroplast methionine sulfoxide reductase B2 [Source:PGSC_GENE;Acc:PGSC0003DMG400003115]

Coordinates

chr1:+:83021733..83022741

Molecular Weight (calculated)

20303.1 Da

IEP (calculated)

9.592

GRAVY (calculated)

-0.354

Length

182 amino acids

Sequence
(BLAST)

001: MDSQILKFSP IISSRNITFN SKKAVHIHGL SNTQFRVSAA RSVQKSEEEW RAVLSPDQFR ILRQKGTENQ GSGEYNKFFG VGTYLCAGCG TPLYRSATKF
101: NSPCGWPSFY EGLPGAINRN VSFFPITLAT FPDPDGIRME ITCAACGGHI GHVFKGEWFR TPTNERHCVN SISLKFKPPQ FS

Best Arabidopsis Sequence Match ( AT4G21860.3 )
(BLAST)

001: MAFNIITPGR VYSATSLTFV STIKAAFVKP PLASPSRRNL LRFSSSPLSF PSLRRGFHGG RIVAMGSSAP ESVNKPEEEW RAILSPEQFR ILRQKGTEYP
101: GTGEYNKVFD DGIYCCAGCG TPLYKSTTKF DSGCGWPAFF DGLPGAITRT PDPDGRRIEI TCAACGGHLG HVFKGEGFPT PTDERHCVNS ISLKFTPENP
201: TL

Arabidopsis Description

MSRB2Peptide methionine sulfoxide reductase B2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5C8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.