Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G04830.1 | Thale cress | cytosol | 58.82 | 64.75 |
| AT4G21830.1 | Thale cress | cytosol | 60.78 | 64.58 |
| AT4G21840.1 | Thale cress | cytosol | 59.48 | 63.64 |
| GSMUA_Achr8P05970_001 | Banana | cytosol | 56.21 | 63.24 |
| AT4G21850.1 | Thale cress | cytosol | 58.82 | 62.94 |
| AT4G04810.1 | Thale cress | cytosol | 54.9 | 60.43 |
| AT4G04800.1 | Thale cress | extracellular, plasma membrane, vacuole | 56.86 | 49.43 |
| Solyc01g106400.2.1 | Tomato | plastid | 51.63 | 46.2 |
| VIT_00s0282g00010.t01 | Wine grape | plastid | 58.82 | 45.69 |
| PGSC0003DMT400068883 | Potato | cytosol | 59.48 | 45.5 |
| Solyc10g047930.1.1 | Tomato | plastid | 58.17 | 45.18 |
| KRH21686 | Soybean | plastid | 58.17 | 44.06 |
| PGSC0003DMT400008074 | Potato | plastid | 51.63 | 43.41 |
| KRH10659 | Soybean | plastid | 57.52 | 43.14 |
| AT4G21860.1 | Thale cress | plastid | 56.86 | 43.07 |
| TraesCS1A01G252400.1 | Wheat | mitochondrion, plastid | 55.56 | 39.53 |
| TraesCS1D01G252100.1 | Wheat | mitochondrion, plastid | 55.56 | 39.17 |
| TraesCS1B01G265600.1 | Wheat | mitochondrion, plastid | 55.56 | 38.81 |
| Zm00001d010336_P001 | Maize | mitochondrion | 53.59 | 37.79 |
| EES18201 | Sorghum | mitochondrion | 53.59 | 37.61 |
| Os05t0404200-01 | Rice | plasma membrane | 56.21 | 37.55 |
| AT1G53670.1 | Thale cress | plastid | 30.07 | 22.77 |
Protein Annotations
| Gene3D:2.170.150.20 | MapMan:35.1 | EntrezGene:825821 | UniProt:A0A178V4R5 | ProteinID:AAD03445.1 | ProteinID:AEE82431.1 |
| EMBL:AK118878 | ArrayExpress:AT4G04840 | EnsemblPlantsGene:AT4G04840 | RefSeq:AT4G04840 | TAIR:AT4G04840 | RefSeq:AT4G04840-TAIR-G |
| EnsemblPlants:AT4G04840.1 | TAIR:AT4G04840.1 | Symbol:ATMSRB6 | EMBL:BT005459 | ProteinID:CAB80849.1 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0006950 | GO:GO:0006979 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016491 | GO:GO:0016671 | GO:GO:0019538 | GO:GO:0030091 | GO:GO:0033743 | GO:GO:0046872 |
| GO:GO:0055114 | InterPro:IPR002579 | InterPro:Met_Sox_Rdtase | InterPro:Met_Sox_Rdtase_MsrB | InterPro:Mss4-like_sf | RefSeq:NP_192393.2 |
| ProteinID:OAP00721.1 | PFAM:PF01641 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009025 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PFscan:PS51790 | PANTHER:PTHR10173 | PANTHER:PTHR10173:SF52 |
| UniProt:Q8GWF4 | SUPFAM:SSF51316 | TIGRFAMs:TIGR00357 | UniParc:UPI000000C66A | SEG:seg | : |
Description
MSRB6MSRB6 [Source:UniProtKB/TrEMBL;Acc:A0A178V4R5]
Coordinates
chr4:+:2449434..2451651
Molecular Weight (calculated)
17098.4 Da
IEP (calculated)
7.273
GRAVY (calculated)
-0.536
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MNTSPKMEME MKMETKAAPE AGMIKKSNEE WRTVLSPEQF KILREKSIEK RGSGEYVKLF EEGIYCCVGC GNPVYKSTTK FDSGCGWPAF FDAIPGAINR
101: TEERAGLRYE ITCTKCDGHL GHVLKNEGFP TPTDERHCVN SVALKFSSAI TSQ
101: TEERAGLRYE ITCTKCDGHL GHVLKNEGFP TPTDERHCVN SVALKFSSAI TSQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.