Factsheet for Bra004929.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74756	Canola	nucleus	99.07	98.77
CDY18910	Canola	nucleus	95.37	95.08
Bra000395.1-P	Field mustard	nucleus	77.78	81.03
AT2G45680.1	Thale cress	cytosol	78.4	71.35
VIT_15s0048g01150.t01	Wine grape	nucleus	52.78	50.44
KRH48289	Soybean	nucleus	51.85	50.15
KRH65181	Soybean	nucleus	51.23	49.4
Bra022568.1-P	Field mustard	cytosol	40.12	43.77
GSMUA_Achr3P12320_001	Banana	cytosol	22.84	36.63
Bra026506.1-P	Field mustard	cytosol, mitochondrion, nucleus	23.77	35.65
GSMUA_Achr11P...	Banana	nucleus	24.69	35.4
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	33.02	33.65
PGSC0003DMT400088049	Potato	cytosol	27.78	33.33
GSMUA_Achr4P27220_001	Banana	nucleus	22.53	33.18
PGSC0003DMT400094424	Potato	cytosol	25.0	33.06
Bra009338.1-P	Field mustard	nucleus	23.77	32.63
Bra029366.1-P	Field mustard	cytosol	17.59	32.39
Bra005984.1-P	Field mustard	nucleus	23.15	32.05
GSMUA_Achr5P03320_001	Banana	cytosol	18.52	31.75
Bra028662.1-P	Field mustard	nucleus	22.22	31.44
GSMUA_Achr8P00050_001	Banana	cytoskeleton, cytosol, peroxisome	32.72	30.9
TraesCS4A01G355900.1	Wheat	nucleus	27.47	30.07
Bra009667.1-P	Field mustard	nucleus	22.84	29.6
Bra025528.1-P	Field mustard	nucleus	20.37	29.46
Zm00001d031725_P001	Maize	nucleus	31.17	28.86
TraesCS5D01G516300.1	Wheat	nucleus	30.56	28.78
TraesCS5B01G516200.1	Wheat	cytosol, nucleus, peroxisome	30.56	28.37
OQU80770	Sorghum	nucleus	31.17	28.13
Os08t0544800-01	Rice	nucleus	32.1	27.88
Bra039096.1-P	Field mustard	nucleus	22.84	26.62
HORVU5Hr1G117990.1	Barley	cytosol, mitochondrion, nucleus	30.56	26.4
Bra004407.1-P	Field mustard	nucleus, plastid	25.93	26.17
Bra025244.1-P	Field mustard	nucleus	23.46	24.76
Bra016090.1-P	Field mustard	nucleus	25.62	23.31
Bra003986.1-P	Field mustard	cytosol	17.59	23.27
Bra007875.1-P	Field mustard	cytosol	17.59	23.17
HORVU5Hr1G080210.1	Barley	cytosol	19.14	22.71
Bra008001.1-P	Field mustard	nucleus, plastid	25.31	21.93
EER99208	Sorghum	nucleus	21.3	21.17
Bra027886.1-P	Field mustard	nucleus, plastid	25.62	21.07
Zm00001d006165_P001	Maize	nucleus	21.3	20.91
TraesCS5A01G309300.1	Wheat	cytosol, nucleus, peroxisome	20.99	20.12
TraesCS5D01G316300.1	Wheat	nucleus	20.68	20.06
TraesCS5B01G310000.1	Wheat	cytosol, nucleus, peroxisome	20.99	20.06
Bra018126.1-P	Field mustard	nucleus	27.47	19.1
Os09t0521300-00	Rice	nucleus	22.22	18.9

Protein Annotations

MapMan:15.5.19	EnsemblPlantsGene:Bra004929	EnsemblPlants:Bra004929.1	EnsemblPlants:Bra004929.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR017887	UniProt:M4CL43	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072
PANTHER:PTHR31072:SF69	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0002547FF1	SEG:seg	:

Description

AT2G45680 (E=6e-098) | TCP family transcription factor, putative

Coordinates

chrA05:-:2539838..2540812

Molecular Weight (calculated)

34512.1 Da

IEP (calculated)

10.180

GRAVY (calculated)

-0.274

Length

324 amino acids

Sequence
(BLAST)

001: MATIKHHEDE RLRAVDLTSK PFEVNNAVSL EPKTEPSLES SLQVPSTSMS LAPPSRPPLK RASTKDRHTK VEGRGRRIRM PATCAARIFQ LTRELGHKSD
101: GETIRWLLEN AEPAIIAATG TGTVPAIAMS VNGTLKIPTT TNADSDVGDN SAKKRRKRPS NSEYIDINEA VTVSVSSGLA PISGLSPISS GLAPVSTVSQ
201: QTLPQGMIPM WAIPSNAVIP TVGAFFLVPH VSGPTNQPQM LAFPAAPPSS YVAAVQQASL MARPPFVSVS TPSVMAPSSS SGVTNRGSSS STTNMLRDFS
301: LEIYEKQELH QFMSTTTARS SSNH

Best Arabidopsis Sequence Match ( AT2G45680.1 )
(BLAST)

001: MATIQKLEEV AGKDQTLRAV DLTIINGVRN VETSRPFQVN PTVSLEPKAE PVMPSFSMSL APPSSTGPPL KRASTKDRHT KVEGRGRRIR MPATCAARIF
101: QLTRELGHKS DGETIRWLLE NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDMGE NLMKKKRKRP SNSEYIDISD AVSASSGLAP IATTTTIQPP
201: QALASSTVAQ QLLPQGMYPM WAIPSNAMIP TVGAFFLIPQ IAGPSNQPQL LAFPAAAASP SSYVAAVQQA STMARPPPLQ VVPSSGFVSV SDVSGSNLSR
301: ATSVMAPSSS SGVTTGSSSS IATTTTHTLR DFSLEIYEKQ ELHQFMSTTT ARSSNH

Arabidopsis Description

TCP9Transcription factor TCP9 [Source:UniProtKB/Swiss-Prot;Acc:O64647]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.