Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13675 | Canola | nucleus | 100.0 | 98.71 |
| CDY52403 | Canola | nucleus | 92.83 | 93.44 |
| AT3G27010.1 | Thale cress | nucleus | 85.99 | 84.08 |
| Bra039096.1-P | Field mustard | nucleus | 71.99 | 79.5 |
| VIT_14s0068g01690.t01 | Wine grape | nucleus | 58.31 | 60.47 |
| PGSC0003DMT400052203 | Potato | nucleus | 45.28 | 59.91 |
| PGSC0003DMT400090661 | Potato | nucleus | 50.49 | 55.56 |
| Solyc02g068200.1.1 | Tomato | nucleus | 48.53 | 54.78 |
| KRG94577 | Soybean | nucleus | 56.68 | 52.73 |
| GSMUA_AchrUn_... | Banana | nucleus | 38.44 | 51.98 |
| KRH06910 | Soybean | nucleus | 57.98 | 51.59 |
| GSMUA_Achr11P... | Banana | nucleus | 38.11 | 46.99 |
| Zm00001d011985_P001 | Maize | nucleus | 40.72 | 39.68 |
| Os01t0924400-01 | Rice | nucleus | 40.07 | 38.8 |
| EES01992 | Sorghum | nucleus | 40.72 | 38.46 |
| Zm00001d042305_P001 | Maize | cytosol, mitochondrion, nucleus | 39.74 | 37.65 |
| Bra025528.1-P | Field mustard | nucleus | 26.38 | 36.16 |
| TraesCS3D01G428700.1 | Wheat | nucleus | 39.41 | 36.01 |
| TraesCS3A01G436100.1 | Wheat | nucleus, plastid | 39.41 | 35.48 |
| TraesCS3B01G470700.1 | Wheat | nucleus | 39.41 | 34.67 |
| Bra026506.1-P | Field mustard | cytosol, mitochondrion, nucleus | 23.78 | 33.8 |
| Bra028662.1-P | Field mustard | nucleus | 22.8 | 30.57 |
| Bra009338.1-P | Field mustard | nucleus | 23.45 | 30.51 |
| Bra005984.1-P | Field mustard | nucleus | 22.8 | 29.91 |
| Bra029366.1-P | Field mustard | cytosol | 16.94 | 29.55 |
| Bra009667.1-P | Field mustard | nucleus | 23.78 | 29.2 |
| Bra004407.1-P | Field mustard | nucleus, plastid | 29.97 | 28.66 |
| HORVU3Hr1G095400.2 | Barley | golgi, plasma membrane | 39.41 | 26.02 |
| Bra007875.1-P | Field mustard | cytosol | 20.85 | 26.02 |
| Bra003986.1-P | Field mustard | cytosol | 20.52 | 25.71 |
| Bra022568.1-P | Field mustard | cytosol | 24.43 | 25.25 |
| Bra000395.1-P | Field mustard | nucleus | 24.43 | 24.12 |
| Bra004929.1-P | Field mustard | nucleus | 24.76 | 23.46 |
| Bra027886.1-P | Field mustard | nucleus, plastid | 28.34 | 22.08 |
| Bra016090.1-P | Field mustard | nucleus | 23.45 | 20.22 |
| Bra018126.1-P | Field mustard | nucleus | 29.64 | 19.53 |
| Bra008001.1-P | Field mustard | nucleus, plastid | 22.8 | 18.72 |
Protein Annotations
| MapMan:15.5.19 | MapMan:27.1.5.2 | EnsemblPlantsGene:Bra025244 | EnsemblPlants:Bra025244.1 | EnsemblPlants:Bra025244.1-P | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR017887 | UniProt:M4E8Y8 | PFAM:PF03634 | PFscan:PS51369 |
| PANTHER:PTHR31072 | PANTHER:PTHR31072:SF4 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI000253F61B | SEG:seg |
Description
AT3G27010 (E=2e-108) AT-TCP20, PCF1, TCP20 | AT-TCP20; transcription factor
Coordinates
chrA06:+:22601454..22602377
Molecular Weight (calculated)
32448.8 Da
IEP (calculated)
7.954
GRAVY (calculated)
-0.720
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPKNPNRHQ VPNFLNPPPR NQSLGDASKD DNHHSKPAEV KDFQIVVASD KEPNKKPQQQ QNQLGPKRSS NKDRHIKVEG RGRRIRMPAL CAARIFQLTR
101: ELGHKSDGET IQWLLQQAEP SIIAATGSGT IPASALASAA AAVSSHHLQG GGSLTAGLMI SHELDGGSSS GRPNWGVGGG DGGSRSSLPT GLWPNVAGFG
201: AGVQTMSDGG GYRIGFPGFD YPGGAMSFAS ILGGGSNNQM PGLELGLAQE GNVGVLNPQS FAQIYQQQMS QAQAQGRVLH HTLQHNPSHE EHQQESGEKD
301: DSQGSGR
101: ELGHKSDGET IQWLLQQAEP SIIAATGSGT IPASALASAA AAVSSHHLQG GGSLTAGLMI SHELDGGSSS GRPNWGVGGG DGGSRSSLPT GLWPNVAGFG
201: AGVQTMSDGG GYRIGFPGFD YPGGAMSFAS ILGGGSNNQM PGLELGLAQE GNVGVLNPQS FAQIYQQQMS QAQAQGRVLH HTLQHNPSHE EHQQESGEKD
301: DSQGSGR
001: MDPKNLNRHQ VPNFLNPPPP PRNQGLVDDD AASAVVSDEN RKPTTEIKDF QIVVSASDKE PNKKSQNQNQ LGPKRSSNKD RHTKVEGRGR RIRMPALCAA
101: RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGSGTIPA SALASSAATS NHHQGGSLTA GLMISHDLDG GSSSSGRPLN WGIGGGEGVS RSSLPTGLWP
201: NVAGFGSGVP TTGLMSEGAG YRIGFPGFDF PGVGHMSFAS ILGGNHNQMP GLELGLSQEG NVGVLNPQSF TQIYQQMGQA QAQAQGRVLH HMHHNHEEHQ
301: QESGEKDDSQ GSGR
101: RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGSGTIPA SALASSAATS NHHQGGSLTA GLMISHDLDG GSSSSGRPLN WGIGGGEGVS RSSLPTGLWP
201: NVAGFGSGVP TTGLMSEGAG YRIGFPGFDF PGVGHMSFAS ILGGNHNQMP GLELGLSQEG NVGVLNPQSF TQIYQQMGQA QAQAQGRVLH HMHHNHEEHQ
301: QESGEKDDSQ GSGR
Arabidopsis Description
TCP20TCP20 [Source:UniProtKB/TrEMBL;Acc:A0A178VAT1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.