Factsheet for Bra016090.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96370	Canola	nucleus	93.26	99.1
CDX72856	Canola	nucleus	89.61	95.51
Bra008001.1-P	Field mustard	nucleus, plastid	83.71	79.68
AT1G72010.1	Thale cress	nucleus, plastid	80.62	76.53
Bra026506.1-P	Field mustard	cytosol, mitochondrion, nucleus	28.65	47.22
Bra029366.1-P	Field mustard	cytosol	20.79	42.05
Bra028662.1-P	Field mustard	nucleus	26.69	41.48
Bra009338.1-P	Field mustard	nucleus	26.97	40.68
Bra005984.1-P	Field mustard	nucleus	26.69	40.6
Bra009667.1-P	Field mustard	nucleus	27.81	39.6
Bra003986.1-P	Field mustard	cytosol	21.35	31.02
Bra007875.1-P	Field mustard	cytosol	21.07	30.49
Bra004407.1-P	Field mustard	nucleus, plastid	26.97	29.91
Bra022568.1-P	Field mustard	cytosol	22.19	26.6
Bra025528.1-P	Field mustard	nucleus	16.29	25.89
Bra004929.1-P	Field mustard	nucleus	23.31	25.62
Bra000395.1-P	Field mustard	nucleus	22.19	25.4
Bra039096.1-P	Field mustard	nucleus	18.82	24.1
VIT_18s0117g00340.t01	Wine grape	nucleus	23.88	23.94
Bra025244.1-P	Field mustard	nucleus	20.22	23.45
Bra027886.1-P	Field mustard	nucleus, plastid	25.28	22.84
GSMUA_Achr6P17840_001	Banana	cytosol	23.03	21.13
Solyc01g103780.2.1	Tomato	nucleus	26.4	21.12
PGSC0003DMT400064164	Potato	nucleus	29.49	19.66
GSMUA_Achr10P...	Banana	nucleus	21.91	19.31
Bra018126.1-P	Field mustard	nucleus	25.0	19.1

Protein Annotations

MapMan:15.5.19	EnsemblPlantsGene:Bra016090	EnsemblPlants:Bra016090.1	EnsemblPlants:Bra016090.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR017887	UniProt:M4DHW3	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072
PANTHER:PTHR31072:SF70	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0002541B69	SEG:seg	:

Description

AT1G72010 (E=4e-084) | TCP family transcription factor, putative

Coordinates

chrA07:+:19476938..19478008

Molecular Weight (calculated)

37208.5 Da

IEP (calculated)

7.435

GRAVY (calculated)

-0.605

Length

356 amino acids

Sequence
(BLAST)

001: METRTAEEAS LQLNSTENPS PGGGSVPSTA LAVVKSAVKK PSKDRHTKVD GRGRRIRMPA VCAARVFQLT RELGHKSDGE TIEWLLQQAE PAIIATTGTG
101: TIPANFSTLN ASLRGGGGGG STVFAQSSKS SSLPMSFQGS GMSLYDDSNG ANGSSSSVVV DHSRKLLNGG VFGFHHPPIM SAERNPYRED YFKESEVPSG
201: SSQKPGQFQD QELGPGPGMG RGTPTASVVP QPMWAVAPGS TNGGSAFWML PMSGSGGREQ MQQQQPGHQM WAFNPGSYPV GTGRVVTAAP MGSMMLGGQQ
301: LGLGVAEGNM AAALRGGRGG DGLGMTLEQH QHQHHQQHQE PNNQGEASEN GGDDKK

Best Arabidopsis Sequence Match ( AT1G72010.1 )
(BLAST)

001: MNQNSSVAEA TLQLNSGEKP SPGSIPFISS GQHGNISTSA TSSTSTSSGS ALAVVKSAVK KPTKDRHTKV DGRGRRIRMP AMCAARVFQL TRELGHKSDG
101: ETIEWLLQQA EPAIIASTGT GTIPANFSTL NASLRSGGGS TLFSQASKSS SSPLSFHSTG MSLYEDNNGT NGSSVDPSRK LLNSAANAAV FGFHHQMYPP
201: IMSTERNPNT LVKPYREDYF KEPSSAAEPS ESSQKASQFQ EQELAQGRGT ANVVPQPMWA VAPGTTNGGS AFWMLPMSGS GGREQMQQQP GHQMWAFNPG
301: NYPVGTGRVV TAPMGSMMLG GQQLGLGVAE GNMAAAMRGS RGDGLAMTLD QHQHQLQHQE PNQSQASENG GDDKK

Arabidopsis Description

TCP22Transcription factor TCP22 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7G4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.