Factsheet for Bra008001.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03666	Canola	nucleus, plastid	94.39	99.44
CDX82193	Canola	nucleus, plastid	92.78	98.58
Bra016090.1-P	Field mustard	nucleus	79.68	83.71
AT1G72010.1	Thale cress	nucleus, plastid	83.69	83.47
Bra026506.1-P	Field mustard	cytosol, mitochondrion, nucleus	25.94	44.91
Bra029366.1-P	Field mustard	cytosol	18.72	39.77
Bra028662.1-P	Field mustard	nucleus	23.8	38.86
Bra009338.1-P	Field mustard	nucleus	24.33	38.56
Bra005984.1-P	Field mustard	nucleus	24.06	38.46
Bra009667.1-P	Field mustard	nucleus	25.13	37.6
Bra003986.1-P	Field mustard	cytosol	19.52	29.8
Bra004407.1-P	Field mustard	nucleus, plastid	25.13	29.28
Bra007875.1-P	Field mustard	cytosol	19.25	29.27
Bra022568.1-P	Field mustard	cytosol	21.39	26.94
Bra025528.1-P	Field mustard	nucleus	15.24	25.45
Bra004929.1-P	Field mustard	nucleus	21.93	25.31
Bra000395.1-P	Field mustard	nucleus	20.59	24.76
VIT_18s0117g00340.t01	Wine grape	nucleus	23.26	24.51
Bra039096.1-P	Field mustard	nucleus	17.38	23.38
Bra025244.1-P	Field mustard	nucleus	18.72	22.8
Bra027886.1-P	Field mustard	nucleus, plastid	23.8	22.59
Solyc01g103780.2.1	Tomato	nucleus	25.67	21.57
GSMUA_Achr6P17840_001	Banana	cytosol	22.19	21.39
PGSC0003DMT400064164	Potato	nucleus	28.07	19.66
Bra018126.1-P	Field mustard	nucleus	23.8	19.1
GSMUA_Achr10P...	Banana	nucleus	19.79	18.32

Protein Annotations

MapMan:15.5.19	EnsemblPlantsGene:Bra008001	EnsemblPlants:Bra008001.1	EnsemblPlants:Bra008001.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR017887	UniProt:M4CUV6	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072
PANTHER:PTHR31072:SF70	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0002546E1A	SEG:seg	:

Description

AT1G72010 (E=3e-117) | TCP family transcription factor, putative

Coordinates

chrA02:+:12465969..12467093

Molecular Weight (calculated)

39100.5 Da

IEP (calculated)

8.996

GRAVY (calculated)

-0.667

Length

374 amino acids

Sequence
(BLAST)

001: MDQNSHDRPT AEAGLQLNST ENPSPGRSVH FAGGATSSST STSSGTALAV VKPAAKKPSK DRHTKVDGRG RRIRMPALCA ARVFQLTREL GHKSDGETIE
101: WLLQQAEPAI IASTGTGTIP ANFSTLNATL RGGGGSTIFA QSSKSSPFHS TGMSLYEDSN GTNGSSSSAA KLLNAATAAQ NAAVFGFHHQ GYQPIMSAER
201: NPPTLGKPYR EDYFKESEPS GSSQKPGQFQ EQEMGPGPGM GRGTANVVPQ PMWAVAPGTT NGGSAFWMLP MSGSGGREQM QQQPGHQMWA FNPGSYPVGT
301: GRVVTAPMGS MMLGGQQLGL GVAEGNMAAA MRGSRGGGGD GLAMTLDQHQ HQHHQQHQEP NQSQASENGG DDKK

Best Arabidopsis Sequence Match ( AT1G72010.1 )
(BLAST)

001: MNQNSSVAEA TLQLNSGEKP SPGSIPFISS GQHGNISTSA TSSTSTSSGS ALAVVKSAVK KPTKDRHTKV DGRGRRIRMP AMCAARVFQL TRELGHKSDG
101: ETIEWLLQQA EPAIIASTGT GTIPANFSTL NASLRSGGGS TLFSQASKSS SSPLSFHSTG MSLYEDNNGT NGSSVDPSRK LLNSAANAAV FGFHHQMYPP
201: IMSTERNPNT LVKPYREDYF KEPSSAAEPS ESSQKASQFQ EQELAQGRGT ANVVPQPMWA VAPGTTNGGS AFWMLPMSGS GGREQMQQQP GHQMWAFNPG
301: NYPVGTGRVV TAPMGSMMLG GQQLGLGVAE GNMAAAMRGS RGDGLAMTLD QHQHQLQHQE PNQSQASENG GDDKK

Arabidopsis Description

TCP22Transcription factor TCP22 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7G4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.