Factsheet for AT1G72010.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

plastid 4
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03666	Canola	nucleus, plastid	80.8	85.35
CDX82193	Canola	nucleus, plastid	79.73	84.94
Bra008001.1-P	Field mustard	nucleus, plastid	83.47	83.69
Bra016090.1-P	Field mustard	nucleus	76.53	80.62
CDX96370	Canola	nucleus	71.47	80.0
CDX72856	Canola	nucleus	71.2	79.94
AT5G08330.1	Thale cress	nucleus	24.27	38.08
AT5G23280.1	Thale cress	nucleus	25.33	38.0
AT2G37000.1	Thale cress	nucleus, plastid	16.27	32.45
AT1G69690.1	Thale cress	nucleus, plastid	26.4	30.46
AT1G35560.1	Thale cress	nucleus, plastid	26.67	29.33
AT5G51910.1	Thale cress	nucleus	20.8	26.62
AT3G45150.1	Thale cress	nucleus	11.47	26.06
VIT_18s0117g00340.t01	Wine grape	nucleus	24.0	25.35
AT5G41030.1	Thale cress	nucleus	15.47	23.87
AT1G58100.1	Thale cress	nucleus	24.8	23.19
AT3G27010.1	Thale cress	nucleus	19.2	22.93
Solyc01g103780.2.1	Tomato	nucleus	26.67	22.47
AT2G45680.1	Thale cress	cytosol	20.53	21.63
GSMUA_Achr6P17840_001	Banana	cytosol	21.6	20.88
PGSC0003DMT400064164	Potato	nucleus	29.07	20.41
AT3G47620.1	Thale cress	nucleus	24.27	18.61
GSMUA_Achr10P...	Banana	nucleus	20.0	18.56

Protein Annotations

MapMan:15.5.19	EntrezGene:843532	UniProt:A0A178W3Z1	ProteinID:AAG51130.1	ProteinID:AEE35263.1	ArrayExpress:AT1G72010
EnsemblPlantsGene:AT1G72010	RefSeq:AT1G72010	TAIR:AT1G72010	RefSeq:AT1G72010-TAIR-G	EnsemblPlants:AT1G72010.1	TAIR:AT1G72010.1
EMBL:AY080776	EMBL:AY150488	Unigene:At.23095	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR017887	RefSeq:NP_177346.1	ProteinID:OAP13239.1	PFAM:PF03634	PO:PO:0000293
PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF70	UniProt:Q9C7G4	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP
UniParc:UPI00000AC36D	SEG:seg	:	:	:	:

Description

TCP22Transcription factor TCP22 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7G4]

Coordinates

chr1:+:27107558..27109275

Molecular Weight (calculated)

39601.2 Da

IEP (calculated)

8.985

GRAVY (calculated)

-0.591

Length

375 amino acids

Sequence
(BLAST)

001: MNQNSSVAEA TLQLNSGEKP SPGSIPFISS GQHGNISTSA TSSTSTSSGS ALAVVKSAVK KPTKDRHTKV DGRGRRIRMP AMCAARVFQL TRELGHKSDG
101: ETIEWLLQQA EPAIIASTGT GTIPANFSTL NASLRSGGGS TLFSQASKSS SSPLSFHSTG MSLYEDNNGT NGSSVDPSRK LLNSAANAAV FGFHHQMYPP
201: IMSTERNPNT LVKPYREDYF KEPSSAAEPS ESSQKASQFQ EQELAQGRGT ANVVPQPMWA VAPGTTNGGS AFWMLPMSGS GGREQMQQQP GHQMWAFNPG
301: NYPVGTGRVV TAPMGSMMLG GQQLGLGVAE GNMAAAMRGS RGDGLAMTLD QHQHQLQHQE PNQSQASENG GDDKK

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.