Subcellular Localization
min:
: max
Winner_takes_all: nucleus, plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G049400.1 | Wheat | cytosol | 20.74 | 44.32 |
| TraesCS2B01G062900.1 | Wheat | plastid | 28.19 | 33.12 |
| Zm00001d025033_P001 | Maize | plastid | 28.19 | 30.11 |
| Os04t0194600-01 | Rice | plastid | 27.66 | 29.55 |
| EES10469 | Sorghum | plastid | 27.66 | 29.38 |
| AT5G08330.1 | Thale cress | nucleus | 31.38 | 24.69 |
| AT3G45150.1 | Thale cress | nucleus | 20.74 | 23.64 |
| AT5G23280.1 | Thale cress | nucleus | 30.32 | 22.8 |
| AT5G41030.1 | Thale cress | nucleus | 26.6 | 20.58 |
| AT3G27010.1 | Thale cress | nucleus | 32.45 | 19.43 |
| AT5G51910.1 | Thale cress | nucleus | 29.79 | 19.11 |
| AT1G69690.1 | Thale cress | nucleus, plastid | 31.91 | 18.46 |
| AT1G35560.1 | Thale cress | nucleus, plastid | 32.45 | 17.89 |
| AT2G45680.1 | Thale cress | cytosol | 32.98 | 17.42 |
| AT1G72010.1 | Thale cress | nucleus, plastid | 32.45 | 16.27 |
| AT1G58100.1 | Thale cress | nucleus | 32.98 | 15.46 |
| AT3G47620.1 | Thale cress | nucleus | 36.17 | 13.91 |
Protein Annotations
| MapMan:15.5.19 | EntrezGene:818274 | ProteinID:AAD31585.1 | ProteinID:AEC09333.1 | ArrayExpress:AT2G37000 | EnsemblPlantsGene:AT2G37000 |
| RefSeq:AT2G37000 | TAIR:AT2G37000 | RefSeq:AT2G37000-TAIR-G | EnsemblPlants:AT2G37000.1 | TAIR:AT2G37000.1 | Unigene:At.37479 |
| EMBL:BT010700 | EMBL:BT011504 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR017887 | RefSeq:NP_181237.1 | PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF71 | UniProt:Q9SJK7 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI00000A4844 | SEG:seg |
Description
TCP11Transcription factor TCP11 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJK7]
Coordinates
chr2:+:15540246..15541248
Molecular Weight (calculated)
20683.2 Da
IEP (calculated)
7.030
GRAVY (calculated)
-0.555
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MIFQNVCRNE SNFNAIASES RSQTQFGVSK SSSSGGGCIS ARTKDRHTKV NGRSRRVTMP ALAAARIFQL TRELGHKTEG ETIEWLLSQA EPSIIAATGY
101: GTKLISNWVD VAADDSSSSS SMTSPQTQTQ TPQSPSCRLD LCQPIGIQYP VNGYSHMPFT AMLLEPMTTT AESEVEIAEE EERRRRHH
101: GTKLISNWVD VAADDSSSSS SMTSPQTQTQ TPQSPSCRLD LCQPIGIQYP VNGYSHMPFT AMLLEPMTTT AESEVEIAEE EERRRRHH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.