Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025244.1-P | Field mustard | nucleus | 84.08 | 85.99 |
| CDY13675 | Canola | nucleus | 84.71 | 85.53 |
| CDY52403 | Canola | nucleus | 80.25 | 82.62 |
| CDY20065 | Canola | cytosol | 68.79 | 80.3 |
| CDY00171 | Canola | nucleus | 68.79 | 78.26 |
| Bra039096.1-P | Field mustard | nucleus | 69.11 | 78.06 |
| VIT_14s0068g01690.t01 | Wine grape | nucleus | 57.96 | 61.49 |
| PGSC0003DMT400052203 | Potato | nucleus | 45.22 | 61.21 |
| PGSC0003DMT400090661 | Potato | nucleus | 50.0 | 56.27 |
| KRG94577 | Soybean | nucleus | 57.64 | 54.85 |
| Solyc02g068200.1.1 | Tomato | nucleus | 47.45 | 54.78 |
| GSMUA_AchrUn_... | Banana | nucleus | 38.22 | 52.86 |
| KRH06910 | Soybean | nucleus | 57.64 | 52.46 |
| GSMUA_Achr11P... | Banana | nucleus | 37.9 | 47.79 |
| Zm00001d011985_P001 | Maize | nucleus | 42.36 | 42.22 |
| EES01992 | Sorghum | nucleus | 42.04 | 40.62 |
| Zm00001d042305_P001 | Maize | cytosol, mitochondrion, nucleus | 41.72 | 40.43 |
| Os01t0924400-01 | Rice | nucleus | 40.76 | 40.38 |
| TraesCS3D01G428700.1 | Wheat | nucleus | 41.08 | 38.39 |
| TraesCS3A01G436100.1 | Wheat | nucleus, plastid | 41.4 | 38.12 |
| TraesCS3B01G470700.1 | Wheat | nucleus | 41.08 | 36.96 |
| AT5G41030.1 | Thale cress | nucleus | 25.16 | 32.51 |
| AT2G37000.1 | Thale cress | nucleus, plastid | 19.43 | 32.45 |
| AT5G08330.1 | Thale cress | nucleus | 22.93 | 30.13 |
| AT5G23280.1 | Thale cress | nucleus | 23.57 | 29.6 |
| AT1G69690.1 | Thale cress | nucleus, plastid | 28.98 | 28.0 |
| AT3G45150.1 | Thale cress | nucleus | 14.65 | 27.88 |
| HORVU3Hr1G095400.2 | Barley | golgi, plasma membrane | 41.08 | 27.74 |
| AT5G51910.1 | Thale cress | nucleus | 23.57 | 25.26 |
| AT1G35560.1 | Thale cress | nucleus, plastid | 26.75 | 24.63 |
| AT2G45680.1 | Thale cress | cytosol | 25.48 | 22.47 |
| AT1G58100.1 | Thale cress | nucleus | 27.07 | 21.2 |
| AT1G72010.1 | Thale cress | nucleus, plastid | 22.93 | 19.2 |
| AT3G47620.1 | Thale cress | nucleus | 28.66 | 18.4 |
Protein Annotations
| MapMan:15.5.19 | MapMan:27.1.5.2 | EntrezGene:822318 | UniProt:A0A178VAT1 | ProteinID:AEE77254.1 | EMBL:AJ291749 |
| EMBL:AK118178 | ProteinID:ANM65877.1 | Symbol:AT-TCP20 | ArrayExpress:AT3G27010 | EnsemblPlantsGene:AT3G27010 | RefSeq:AT3G27010 |
| TAIR:AT3G27010 | RefSeq:AT3G27010-TAIR-G | EnsemblPlants:AT3G27010.1 | TAIR:AT3G27010.1 | Unigene:At.25359 | ProteinID:BAB01082.1 |
| EMBL:BT006043 | GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009653 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR017887 | RefSeq:NP_001327814.1 | RefSeq:NP_189337.1 |
| ProteinID:OAP02465.1 | PFAM:PF03634 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0004507 |
| PO:PO:0007103 | PO:PO:0007611 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009025 | PO:PO:0009046 |
| PO:PO:0009047 | PFscan:PS51369 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF4 | UniProt:Q9LSD5 | InterPro:TF_TCP_subgr |
| InterPro:Transcription_factor_TCP | UniParc:UPI00000AC4AE | SEG:seg | : | : | : |
Description
TCP20TCP20 [Source:UniProtKB/TrEMBL;Acc:A0A178VAT1]
Coordinates
chr3:-:9957376..9958945
Molecular Weight (calculated)
33392.9 Da
IEP (calculated)
7.257
GRAVY (calculated)
-0.672
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPKNLNRHQ VPNFLNPPPP PRNQGLVDDD AASAVVSDEN RKPTTEIKDF QIVVSASDKE PNKKSQNQNQ LGPKRSSNKD RHTKVEGRGR RIRMPALCAA
101: RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGSGTIPA SALASSAATS NHHQGGSLTA GLMISHDLDG GSSSSGRPLN WGIGGGEGVS RSSLPTGLWP
201: NVAGFGSGVP TTGLMSEGAG YRIGFPGFDF PGVGHMSFAS ILGGNHNQMP GLELGLSQEG NVGVLNPQSF TQIYQQMGQA QAQAQGRVLH HMHHNHEEHQ
301: QESGEKDDSQ GSGR
101: RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGSGTIPA SALASSAATS NHHQGGSLTA GLMISHDLDG GSSSSGRPLN WGIGGGEGVS RSSLPTGLWP
201: NVAGFGSGVP TTGLMSEGAG YRIGFPGFDF PGVGHMSFAS ILGGNHNQMP GLELGLSQEG NVGVLNPQSF TQIYQQMGQA QAQAQGRVLH HMHHNHEEHQ
301: QESGEKDDSQ GSGR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.