Factsheet for PGSC0003DMT400090661

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g068200.1.1	Tomato	nucleus	91.76	94.12
PGSC0003DMT400052203	Potato	nucleus	58.78	70.69
VIT_14s0068g01690.t01	Wine grape	nucleus	70.25	66.22
KRG94577	Soybean	nucleus	68.1	57.58
KRH06910	Soybean	nucleus	66.67	53.91
CDY20065	Canola	cytosol	49.1	50.93
Bra025244.1-P	Field mustard	nucleus	55.56	50.49
AT3G27010.1	Thale cress	nucleus	56.27	50.0
Bra039096.1-P	Field mustard	nucleus	49.82	50.0
CDY13675	Canola	nucleus	55.56	49.84
CDY00171	Canola	nucleus	47.67	48.19
CDY52403	Canola	nucleus	51.61	47.21
GSMUA_Achr5P25030_001	Banana	nucleus	45.52	44.25
PGSC0003DMT400055541	Potato	plastid	26.52	36.82
Zm00001d011985_P001	Maize	nucleus	41.22	36.51
Os01t0924400-01	Rice	nucleus	41.22	36.28
Zm00001d042305_P001	Maize	cytosol, mitochondrion, nucleus	41.58	35.8
EES01992	Sorghum	nucleus	41.58	35.69
TraesCS3D01G428700.1	Wheat	nucleus	41.22	34.23
TraesCS3A01G436100.1	Wheat	nucleus, plastid	41.58	34.02
TraesCS3B01G470700.1	Wheat	nucleus	41.58	33.24
PGSC0003DMT400067150	Potato	nucleus, plastid	29.75	25.38
HORVU3Hr1G095400.2	Barley	golgi, plasma membrane	40.86	24.52
PGSC0003DMT400001613	Potato	nucleus	35.84	24.15
PGSC0003DMT400083148	Potato	nucleus	34.41	23.41
PGSC0003DMT400094424	Potato	cytosol	20.43	23.27
PGSC0003DMT400008728	Potato	nucleus	30.47	22.91
PGSC0003DMT400095626	Potato	plastid	22.22	22.14
PGSC0003DMT400088049	Potato	cytosol	21.15	21.85
PGSC0003DMT400023981	Potato	nucleus	30.11	21.59
PGSC0003DMT400062327	Potato	nucleus	25.09	19.13
PGSC0003DMT400058534	Potato	nucleus	25.09	18.72
PGSC0003DMT400064164	Potato	nucleus	35.13	18.35
PGSC0003DMT400042166	Potato	cytosol	26.52	16.52

Protein Annotations

EntrezGene:102584493	MapMan:15.5.19	MapMan:27.1.5.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR017887	UniProt:M1DKW5	PFAM:PF03634	EnsemblPlantsGene:PGSC0003DMG400040232	PGSC:PGSC0003DMG400040232	EnsemblPlants:PGSC0003DMT400090661
PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF4	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0002962E28
RefSeq:XP_006365022.1	SEG:seg	:	:	:	:

Description

Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400040232]

Coordinates

chr2:+:26938249..26939088

Molecular Weight (calculated)

30003.3 Da

IEP (calculated)

9.164

GRAVY (calculated)

-0.606

Length

279 amino acids

Sequence
(BLAST)

001: MDPKQPNNKN IKPTPDQIKD LQILKNDETK KQQQVAAPKR KDRHTKVEGR GRRIRMPALC AARIFQLTRE LGHKSDGETI QWLLQQAEPS IFAATGTGTI
101: PASALAAAAS VSQQGISVSA GLMIESGANI AGSGSSRSSN SRTNWPMICG DFGRPHLATV GIWPAPAPVI TSFGFQSSSA PSSASLGSES SNYYLQKIGF
201: PGFDLPAATN MNPMSFTSIL GGSNQQLPGL ELGLSQEGHL GVLNQIYQQA RMQHPQQQQQ DQHQHQQQSP EDDSQGSGH

Best Arabidopsis Sequence Match ( AT3G27010.1 )
(BLAST)

001: MDPKNLNRHQ VPNFLNPPPP PRNQGLVDDD AASAVVSDEN RKPTTEIKDF QIVVSASDKE PNKKSQNQNQ LGPKRSSNKD RHTKVEGRGR RIRMPALCAA
101: RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGSGTIPA SALASSAATS NHHQGGSLTA GLMISHDLDG GSSSSGRPLN WGIGGGEGVS RSSLPTGLWP
201: NVAGFGSGVP TTGLMSEGAG YRIGFPGFDF PGVGHMSFAS ILGGNHNQMP GLELGLSQEG NVGVLNPQSF TQIYQQMGQA QAQAQGRVLH HMHHNHEEHQ
301: QESGEKDDSQ GSGR

Arabidopsis Description

TCP20TCP20 [Source:UniProtKB/TrEMBL;Acc:A0A178VAT1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.