Factsheet for PGSC0003DMT400095626

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G049400.1	Wheat	cytosol	12.5	39.77
TraesCS2B01G062900.1	Wheat	plastid	18.21	31.88
Zm00001d025033_P001	Maize	plastid	18.57	29.55
Os04t0194600-01	Rice	plastid	17.5	27.84
EES10469	Sorghum	plastid	17.5	27.68
PGSC0003DMT400055541	Potato	plastid	18.21	25.37
PGSC0003DMT400052203	Potato	nucleus	20.71	25.0
PGSC0003DMT400090661	Potato	nucleus	22.14	22.22
PGSC0003DMT400088049	Potato	cytosol	18.93	19.63
PGSC0003DMT400094424	Potato	cytosol	16.79	19.18
PGSC0003DMT400067150	Potato	nucleus, plastid	20.36	17.43
PGSC0003DMT400058534	Potato	nucleus	22.5	16.84
PGSC0003DMT400062327	Potato	nucleus	21.07	16.12
PGSC0003DMT400083148	Potato	nucleus	23.21	15.85
PGSC0003DMT400001613	Potato	nucleus	22.14	14.98
PGSC0003DMT400023981	Potato	nucleus	20.71	14.91
PGSC0003DMT400008728	Potato	nucleus	19.64	14.82
PGSC0003DMT400042166	Potato	cytosol	18.93	11.83
PGSC0003DMT400064164	Potato	nucleus	21.07	11.05

Protein Annotations

EntrezGene:102599856	MapMan:15.5.19	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887
UniProt:M1DWQ3	PFAM:PF03634	EnsemblPlantsGene:PGSC0003DMG400045197	PGSC:PGSC0003DMG400045197	EnsemblPlants:PGSC0003DMT400095626	PFscan:PS51369
PANTHER:PTHR31072	PANTHER:PTHR31072:SF15	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI000295FFA0	RefSeq:XP_006339498.1
SEG:seg	:	:	:	:	:

Description

Transcription factor TCP9 [Source:PGSC_GENE;Acc:PGSC0003DMG400045197]

Coordinates

chr1:+:71322006..71322848

Molecular Weight (calculated)

29950.1 Da

IEP (calculated)

10.783

GRAVY (calculated)

-0.308

Length

280 amino acids

Sequence
(BLAST)

001: MESKNIKSFT AAPPSAWRRQ VAPPLISPKQ ESHDMAEKSP APSIIKVTLP TPKPRPSVPP PPQLPPRGND ADRPTKVDGG GRRIRIPATC AARVFQLTRE
101: LGHKTDGETI QWLLERAEPS IISATGTGVT AVSINGTTKI PTTENNDTLT GKRKRCDCGN VKFIDVKQRN NHAIRENEAK LPNNMATILA PVMSIVPPQT
201: IMPVGSMFSV PARINSSMAA PSTVWLIQQT PLIPSTRQSA AQVNCVSVRP AATFLGVPSA SLIPASATNV SSSSYSFGHC

Best Arabidopsis Sequence Match ( AT2G45680.1 )
(BLAST)

001: MATIQKLEEV AGKDQTLRAV DLTIINGVRN VETSRPFQVN PTVSLEPKAE PVMPSFSMSL APPSSTGPPL KRASTKDRHT KVEGRGRRIR MPATCAARIF
101: QLTRELGHKS DGETIRWLLE NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDMGE NLMKKKRKRP SNSEYIDISD AVSASSGLAP IATTTTIQPP
201: QALASSTVAQ QLLPQGMYPM WAIPSNAMIP TVGAFFLIPQ IAGPSNQPQL LAFPAAAASP SSYVAAVQQA STMARPPPLQ VVPSSGFVSV SDVSGSNLSR
301: ATSVMAPSSS SGVTTGSSSS IATTTTHTLR DFSLEIYEKQ ELHQFMSTTT ARSSNH

Arabidopsis Description

TCP9Transcription factor TCP9 [Source:UniProtKB/Swiss-Prot;Acc:O64647]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.