Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400088049 | Potato | cytosol | 80.82 | 73.33 |
| GSMUA_Achr3P12320_001 | Banana | cytosol | 23.67 | 28.71 |
| PGSC0003DMT400062327 | Potato | nucleus | 39.59 | 26.5 |
| VIT_15s0048g01150.t01 | Wine grape | nucleus | 35.92 | 25.96 |
| CDX95656 | Canola | nucleus | 30.61 | 25.6 |
| GSMUA_Achr4P27220_001 | Banana | nucleus | 22.86 | 25.45 |
| GSMUA_Achr11P... | Banana | nucleus | 23.27 | 25.22 |
| Bra004929.1-P | Field mustard | nucleus | 33.06 | 25.0 |
| CDX74756 | Canola | nucleus | 33.06 | 24.92 |
| CDY18910 | Canola | nucleus | 32.65 | 24.62 |
| CDY53888 | Canola | nucleus | 31.02 | 24.44 |
| Bra000395.1-P | Field mustard | nucleus | 30.61 | 24.12 |
| GSMUA_Achr11P... | Banana | cytosol, peroxisome, plastid | 31.02 | 23.9 |
| KRH48289 | Soybean | nucleus | 32.65 | 23.88 |
| PGSC0003DMT400052203 | Potato | nucleus | 22.45 | 23.71 |
| KRH65181 | Soybean | nucleus | 32.24 | 23.51 |
| GSMUA_Achr5P03320_001 | Banana | cytosol | 17.96 | 23.28 |
| PGSC0003DMT400055541 | Potato | plastid | 18.78 | 22.89 |
| AT2G45680.1 | Thale cress | cytosol | 33.06 | 22.75 |
| TraesCS4A01G355900.1 | Wheat | nucleus | 27.35 | 22.64 |
| Zm00001d031725_P001 | Maize | nucleus | 31.43 | 22.0 |
| GSMUA_Achr8P00050_001 | Banana | cytoskeleton, cytosol, peroxisome | 29.8 | 21.28 |
| TraesCS5D01G516300.1 | Wheat | nucleus | 29.8 | 21.22 |
| OQU80770 | Sorghum | nucleus | 31.02 | 21.17 |
| TraesCS5B01G516200.1 | Wheat | cytosol, nucleus, peroxisome | 29.8 | 20.92 |
| PGSC0003DMT400058534 | Potato | nucleus | 31.43 | 20.59 |
| PGSC0003DMT400090661 | Potato | nucleus | 23.27 | 20.43 |
| Os08t0544800-01 | Rice | nucleus | 31.02 | 20.38 |
| PGSC0003DMT400067150 | Potato | nucleus, plastid | 26.53 | 19.88 |
| HORVU5Hr1G117990.1 | Barley | cytosol, mitochondrion, nucleus | 29.8 | 19.47 |
| PGSC0003DMT400023981 | Potato | nucleus | 28.16 | 17.74 |
| Zm00001d006165_P001 | Maize | nucleus | 22.86 | 16.97 |
| PGSC0003DMT400095626 | Potato | plastid | 19.18 | 16.79 |
| PGSC0003DMT400008728 | Potato | nucleus | 25.31 | 16.71 |
| EER99208 | Sorghum | nucleus | 21.63 | 16.26 |
| PGSC0003DMT400001613 | Potato | nucleus | 27.35 | 16.18 |
| PGSC0003DMT400083148 | Potato | nucleus | 26.94 | 16.1 |
| HORVU5Hr1G080210.1 | Barley | cytosol | 17.14 | 15.38 |
| TraesCS5A01G309300.1 | Wheat | cytosol, nucleus, peroxisome | 21.22 | 15.38 |
| TraesCS5D01G316300.1 | Wheat | nucleus | 20.82 | 15.27 |
| TraesCS5B01G310000.1 | Wheat | cytosol, nucleus, peroxisome | 20.82 | 15.04 |
| Os09t0521300-00 | Rice | nucleus | 22.86 | 14.7 |
| PGSC0003DMT400042166 | Potato | cytosol | 24.9 | 13.62 |
| PGSC0003DMT400064164 | Potato | nucleus | 28.16 | 12.92 |
Protein Annotations
| EntrezGene:107057950 | MapMan:15.5.19 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR017887 |
| UniProt:M1DU44 | PFAM:PF03634 | EnsemblPlantsGene:PGSC0003DMG400043995 | PGSC:PGSC0003DMG400043995 | EnsemblPlants:PGSC0003DMT400094424 | PFscan:PS51369 |
| PANTHER:PTHR31072 | PANTHER:PTHR31072:SF15 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI000295275D | RefSeq:XP_015158607.1 |
| SEG:seg | : | : | : | : | : |
Description
TCP domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400043995]
Coordinates
chr3:-:41674091..41674828
Molecular Weight (calculated)
26286.6 Da
IEP (calculated)
10.274
GRAVY (calculated)
-0.254
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MVNVDQNKQK VDDNGTKVLG ADPLLGDSHE SAIAVDLSQV VKKRAKYKHT KVEGRGTRVR LSPICAARIF QLTQELGHKS EAETLKWILE HAEPAIIAAT
101: GTGTIPTNAI QVNGMFKIPA TINDGESFVR KRKRAFNSEF YDVHEKSKFA PVAPIAPKGV VPVWPVGNGY YMPPPVARPH LWASPLINVN AVGAGELKLS
201: SSCVSKSAGN GNKLGDGVSV MAPSSTSTSL LATTTTTRRF SKETL
101: GTGTIPTNAI QVNGMFKIPA TINDGESFVR KRKRAFNSEF YDVHEKSKFA PVAPIAPKGV VPVWPVGNGY YMPPPVARPH LWASPLINVN AVGAGELKLS
201: SSCVSKSAGN GNKLGDGVSV MAPSSTSTSL LATTTTTRRF SKETL
001: MATIQKLEEV AGKDQTLRAV DLTIINGVRN VETSRPFQVN PTVSLEPKAE PVMPSFSMSL APPSSTGPPL KRASTKDRHT KVEGRGRRIR MPATCAARIF
101: QLTRELGHKS DGETIRWLLE NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDMGE NLMKKKRKRP SNSEYIDISD AVSASSGLAP IATTTTIQPP
201: QALASSTVAQ QLLPQGMYPM WAIPSNAMIP TVGAFFLIPQ IAGPSNQPQL LAFPAAAASP SSYVAAVQQA STMARPPPLQ VVPSSGFVSV SDVSGSNLSR
301: ATSVMAPSSS SGVTTGSSSS IATTTTHTLR DFSLEIYEKQ ELHQFMSTTT ARSSNH
101: QLTRELGHKS DGETIRWLLE NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDMGE NLMKKKRKRP SNSEYIDISD AVSASSGLAP IATTTTIQPP
201: QALASSTVAQ QLLPQGMYPM WAIPSNAMIP TVGAFFLIPQ IAGPSNQPQL LAFPAAAASP SSYVAAVQQA STMARPPPLQ VVPSSGFVSV SDVSGSNLSR
301: ATSVMAPSSS SGVTTGSSSS IATTTTHTLR DFSLEIYEKQ ELHQFMSTTT ARSSNH
Arabidopsis Description
TCP9Transcription factor TCP9 [Source:UniProtKB/Swiss-Prot;Acc:O64647]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.