Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER99208 | Sorghum | nucleus | 82.12 | 83.13 |
| TraesCS5B01G310000.1 | Wheat | cytosol, nucleus, peroxisome | 60.3 | 58.7 |
| TraesCS5D01G316300.1 | Wheat | nucleus | 58.79 | 58.08 |
| TraesCS5A01G309300.1 | Wheat | cytosol, nucleus, peroxisome | 58.48 | 57.1 |
| Os09t0521300-00 | Rice | nucleus | 54.24 | 46.98 |
| HORVU5Hr1G080210.1 | Barley | cytosol | 31.52 | 38.1 |
| VIT_16s0022g02480.t01 | Wine grape | nucleus | 16.36 | 31.95 |
| Zm00001d018530_P001 | Maize | plastid | 19.09 | 30.43 |
| Zm00001d025033_P001 | Maize | plastid | 16.06 | 30.11 |
| Zm00001d025896_P001 | Maize | plastid | 18.79 | 29.95 |
| Zm00001d017350_P001 | Maize | plastid | 19.09 | 28.64 |
| Zm00001d051216_P001 | Maize | plastid | 18.79 | 28.44 |
| GSMUA_Achr3P12320_001 | Banana | cytosol | 16.97 | 27.72 |
| Zm00001d031725_P001 | Maize | nucleus | 29.39 | 27.71 |
| CDY27099 | Canola | nucleus | 20.61 | 24.37 |
| CDX95656 | Canola | nucleus | 21.52 | 24.23 |
| AT5G51910.1 | Thale cress | nucleus | 21.52 | 24.23 |
| CDX91612 | Canola | nucleus | 20.3 | 23.26 |
| Bra022568.1-P | Field mustard | cytosol | 20.91 | 23.23 |
| CDY53888 | Canola | nucleus | 21.82 | 23.15 |
| PGSC0003DMT400094424 | Potato | cytosol | 16.97 | 22.86 |
| Bra000395.1-P | Field mustard | nucleus | 21.52 | 22.83 |
| PGSC0003DMT400088049 | Potato | cytosol | 18.48 | 22.59 |
| KRH35393 | Soybean | nucleus | 21.21 | 22.51 |
| Zm00001d052256_P001 | Maize | cytosol, nucleus, peroxisome | 26.06 | 22.11 |
| KRG91429 | Soybean | nucleus | 21.82 | 22.09 |
| Zm00001d044836_P001 | Maize | nucleus | 23.64 | 21.85 |
| Zm00001d037221_P001 | Maize | cytosol, nucleus, peroxisome | 24.85 | 21.64 |
| Bra004929.1-P | Field mustard | nucleus | 20.91 | 21.3 |
| Zm00001d018045_P001 | Maize | cytosol, nucleus, peroxisome | 25.76 | 21.25 |
| VIT_15s0048g01150.t01 | Wine grape | nucleus | 21.82 | 21.24 |
| CDX74756 | Canola | nucleus | 20.91 | 21.23 |
| Solyc03g006800.1.1 | Tomato | nucleus | 20.91 | 21.17 |
| CDY18910 | Canola | nucleus | 20.61 | 20.92 |
| KRH65181 | Soybean | nucleus | 20.91 | 20.54 |
| KRH48289 | Soybean | nucleus | 20.61 | 20.3 |
| AT2G45680.1 | Thale cress | cytosol | 21.52 | 19.94 |
| PGSC0003DMT400062327 | Potato | nucleus | 21.52 | 19.4 |
| Zm00001d011985_P001 | Maize | nucleus | 18.48 | 19.37 |
| Zm00001d042305_P001 | Maize | cytosol, mitochondrion, nucleus | 18.79 | 19.14 |
| Zm00001d053020_P001 | Maize | cytosol, nucleus, plastid | 22.42 | 19.12 |
| KRH03994 | Soybean | nucleus | 19.7 | 19.12 |
| KRH57263 | Soybean | nucleus | 19.7 | 18.79 |
| Zm00001d004791_P001 | Maize | mitochondrion, nucleus | 11.52 | 18.54 |
| Zm00001d023565_P001 | Maize | nucleus | 22.73 | 18.52 |
| Zm00001d041866_P001 | Maize | nucleus | 22.73 | 18.03 |
| Solyc08g080150.1.1 | Tomato | nucleus | 20.0 | 17.84 |
| Zm00001d031597_P001 | Maize | cytosol, nucleus, plasma membrane, plastid | 14.85 | 17.75 |
| PGSC0003DMT400058534 | Potato | nucleus | 20.0 | 17.65 |
| Zm00001d038444_P001 | Maize | nucleus | 15.45 | 17.17 |
| Zm00001d044344_P001 | Maize | nucleus | 15.15 | 16.84 |
| VIT_02s0025g04590.t01 | Wine grape | nucleus | 20.61 | 16.55 |
Protein Annotations
| EntrezGene:100192578 | MapMan:15.5.19 | UniProt:B4FBV6 | EMBL:BT034594 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR017887 | ProteinID:ONM22936.1 | PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF19 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI00017B643B | EnsemblPlantsGene:Zm00001d006165 | EnsemblPlants:Zm00001d006165_P001 |
| EnsemblPlants:Zm00001d006165_T001 | SEG:seg | : | : | : | : |
Description
TCP-transcription factor 19Transcription factor TCP9
Coordinates
chr2:-:200270198..200271190
Molecular Weight (calculated)
34088.0 Da
IEP (calculated)
5.046
GRAVY (calculated)
-0.361
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MESQAPGRGE EGTKALYLAP EVIGNGTAAG AVAVDAMVSV EAGGSGLPKP EPVPVEFLGS GGLQLSKPRP APRYRDRHTK VEGRGRRIRM AAACAARVAR
101: LTRDLGHKSD GETIRWLLQQ TEPSIIAATG TGTVPAIAIT GTDGVLRLPA EPASEDASGE QQEPAPKRRR KLQPTRAAVG PAVPAPAAYY PVVADPRLQA
201: NGGGAISVSS GLAPASAPAA PAGAIPFIAI AAPRPSAAGD GKQMIPPAAM WMVPQQAGAG NQPTHYWAFT TNSEFLSYQQ QSVFQQQVVY DGEQLVGDGE
301: SQGQQTGGYQ HGDGEGVDEE IAVTDSSSEE
101: LTRDLGHKSD GETIRWLLQQ TEPSIIAATG TGTVPAIAIT GTDGVLRLPA EPASEDASGE QQEPAPKRRR KLQPTRAAVG PAVPAPAAYY PVVADPRLQA
201: NGGGAISVSS GLAPASAPAA PAGAIPFIAI AAPRPSAAGD GKQMIPPAAM WMVPQQAGAG NQPTHYWAFT TNSEFLSYQQ QSVFQQQVVY DGEQLVGDGE
301: SQGQQTGGYQ HGDGEGVDEE IAVTDSSSEE
001: MATIQKLEEV AGKDQTLRAV DLTIINGVRN VETSRPFQVN PTVSLEPKAE PVMPSFSMSL APPSSTGPPL KRASTKDRHT KVEGRGRRIR MPATCAARIF
101: QLTRELGHKS DGETIRWLLE NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDMGE NLMKKKRKRP SNSEYIDISD AVSASSGLAP IATTTTIQPP
201: QALASSTVAQ QLLPQGMYPM WAIPSNAMIP TVGAFFLIPQ IAGPSNQPQL LAFPAAAASP SSYVAAVQQA STMARPPPLQ VVPSSGFVSV SDVSGSNLSR
301: ATSVMAPSSS SGVTTGSSSS IATTTTHTLR DFSLEIYEKQ ELHQFMSTTT ARSSNH
101: QLTRELGHKS DGETIRWLLE NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDMGE NLMKKKRKRP SNSEYIDISD AVSASSGLAP IATTTTIQPP
201: QALASSTVAQ QLLPQGMYPM WAIPSNAMIP TVGAFFLIPQ IAGPSNQPQL LAFPAAAASP SSYVAAVQQA STMARPPPLQ VVPSSGFVSV SDVSGSNLSR
301: ATSVMAPSSS SGVTTGSSSS IATTTTHTLR DFSLEIYEKQ ELHQFMSTTT ARSSNH
Arabidopsis Description
TCP9Transcription factor TCP9 [Source:UniProtKB/Swiss-Prot;Acc:O64647]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.