Factsheet for GRMZM5G830210_P01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CAA33930	Rice	cytosol	95.33	95.33
HORVU0Hr1G037370.1	Barley	cytosol	92.52	92.52
HORVU0Hr1G028370.1	Barley	cytosol	92.52	92.52
HORVU0Hr1G036980.1	Barley	cytosol	91.59	91.59
HORVU6Hr1G037250.1	Barley	cytosol	91.59	91.59
HORVU5Hr1G064730.1	Barley	cytosol	91.59	91.59
HORVU0Hr1G037950.1	Barley	cytosol	91.59	91.59
HORVU0Hr1G033710.1	Barley	cytosol	91.59	91.59
HORVU0Hr1G033440.1	Barley	cytosol	91.59	91.59
HORVU0Hr1G026200.1	Barley	cytosol	91.59	91.59
HORVU0Hr1G026270.1	Barley	cytosol	91.59	91.59
HORVU0Hr1G026810.1	Barley	cytosol	91.59	91.59
HORVU0Hr1G032930.1	Barley	cytosol	91.59	91.59
HORVU0Hr1G037630.1	Barley	cytosol	64.49	90.79
HORVU0Hr1G025190.1	Barley	cytosol	64.49	90.79
HORVU0Hr1G024630.1	Barley	cytosol	64.49	90.79
HORVU0Hr1G034480.1	Barley	cytosol	63.55	89.47
HORVU0Hr1G035290.1	Barley	cytosol	63.55	89.47
AGP50789	Barley	cytosol	92.52	87.61
TraesCS1A01G130000.1	Wheat	cytosol	83.18	84.76
TraesCS5B01G312400.1	Wheat	cytosol	86.92	83.04
TraesCS3A01G454200.1	Wheat	cytosol	84.11	81.08
TraesCS3A01G431900.1	Wheat	cytosol	83.18	80.18
Bra040979.1-P	Field mustard	cytosol, nucleus	60.75	79.27
HORVU3Hr1G110940.1	Barley	cytosol	42.06	68.18
HORVU7Hr1G107570.1	Barley	cytosol	63.55	64.15
HORVU5Hr1G070820.1	Barley	peroxisome	37.38	53.33
PGSC0003DMT400019914	Potato	extracellular, mitochondrion, plastid	50.47	34.84
KRH03161	Soybean	nucleus	44.86	34.78
KRH56784	Soybean	nucleus	45.79	34.27
AT4G11175.1	Thale cress	mitochondrion, plastid	44.86	34.04
CDX86811	Canola	plastid	43.93	33.33
CDY61889	Canola	mitochondrion, plastid	42.99	32.62
CDX86812	Canola	mitochondrion, plastid	42.99	32.62
Solyc12g098350.1.1	Tomato	plastid	46.73	32.05

Protein Annotations

MapMan:17.7.3.2	Gene3D:2.40.50.140	EntrezGene:845177	ProteinID:CAA60320.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0019538	GO:GO:0019843
GO:GO:0043022	EnsemblPlantsGene:GRMZM5G830210	EnsemblPlants:GRMZM5G830210_P01	EnsemblPlants:GRMZM5G830210_T01	InterPro:IPR006196	HAMAP:MF_00075
InterPro:NA-bd_OB-fold	UniProt:P46618	PFAM:PF01176	PFscan:PS50832	PANTHER:PTHR33370	InterPro:RNA-binding_domain_S1_IF1
InterPro:S1_dom	SMART:SM00316	SUPFAM:SSF50249	InterPro:TIF_IF1	TIGRFAMs:TIGR00008	UniParc:UPI000012D241
SEG:seg	:	:	:	:	:

Description

infATranslation initiation factor IF-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P46618]

Coordinates

chrPt:-:78085..78408

Molecular Weight (calculated)

12376.8 Da

IEP (calculated)

10.267

GRAVY (calculated)

-1.022

Length

107 amino acids

Sequence
(BLAST)

001: MTEKKNSREK KNPREAKVTF EGLVTEALPN GMFRVRLEND TIILGYISGK IRSSSIRILM GDRVKIEISR YDSSKGRIIY RLPHKDSKRT EDSKDTEDLK
101: DTKDSKD

Best Arabidopsis Sequence Match ( AT4G11175.1 )
(BLAST)

001: MLQLCSTFRP QLLLPCQFRF TNGVLIPQIN YVASNSVVNI RPMIRCQRAS GGRGGANRSK PAKPQVKEGS NKTVIEGLVT ESLPNGMFRV DLENGDNILG
101: YICGKIRKNF IRILPGDKVK VEMSVYDSTK GRIIFRMSSR D

Arabidopsis Description

Translation initiation factor IF-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82499]
SUBAcon: [plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.