Factsheet for Solyc12g098350.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400019914	Potato	extracellular, mitochondrion, plastid	91.67	92.26
HORVU0Hr1G037630.1	Barley	cytosol	25.64	52.63
HORVU0Hr1G024630.1	Barley	cytosol	25.64	52.63
HORVU0Hr1G025190.1	Barley	cytosol	25.64	52.63
HORVU0Hr1G035290.1	Barley	cytosol	25.64	52.63
HORVU0Hr1G034480.1	Barley	cytosol	25.64	52.63
HORVU0Hr1G028370.1	Barley	cytosol	32.69	47.66
HORVU6Hr1G037250.1	Barley	cytosol	32.69	47.66
HORVU5Hr1G064730.1	Barley	cytosol	32.69	47.66
HORVU0Hr1G037950.1	Barley	cytosol	32.69	47.66
HORVU0Hr1G037370.1	Barley	cytosol	32.69	47.66
HORVU0Hr1G036980.1	Barley	cytosol	32.69	47.66
HORVU0Hr1G033710.1	Barley	cytosol	32.69	47.66
HORVU0Hr1G033440.1	Barley	cytosol	32.69	47.66
HORVU0Hr1G032930.1	Barley	cytosol	32.69	47.66
HORVU0Hr1G026810.1	Barley	cytosol	32.69	47.66
HORVU0Hr1G026270.1	Barley	cytosol	32.69	47.66
HORVU0Hr1G026200.1	Barley	cytosol	32.69	47.66
TraesCS1A01G130000.1	Wheat	cytosol	32.05	47.62
GRMZM5G830210_P01	Maize	plastid	32.05	46.73
CAA33930	Rice	cytosol	32.05	46.73
TraesCS3A01G431900.1	Wheat	cytosol	32.69	45.95
AGP50789	Barley	cytosol	32.69	45.13
Bra040979.1-P	Field mustard	cytosol, nucleus	23.72	45.12
TraesCS3A01G454200.1	Wheat	cytosol	32.05	45.05
TraesCS5B01G312400.1	Wheat	cytosol	32.05	44.64
KRH03161	Soybean	nucleus	37.82	42.75
KRH56784	Soybean	nucleus	37.82	41.26
HORVU7Hr1G107570.1	Barley	cytosol	27.56	40.57
HORVU3Hr1G110940.1	Barley	cytosol	16.03	37.88
CDY61889	Canola	mitochondrion, plastid	33.97	37.59
CDX86812	Canola	mitochondrion, plastid	33.97	37.59
CDX86811	Canola	plastid	33.33	36.88
AT4G11175.1	Thale cress	mitochondrion, plastid	33.33	36.88
HORVU5Hr1G070820.1	Barley	peroxisome	17.31	36.0

Protein Annotations

MapMan:17.7.3.2	Gene3D:2.40.50.140	EMBL:AF347664	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0019538
GO:GO:0043022	InterPro:IPR006196	HAMAP:MF_00075	InterPro:NA-bd_OB-fold	PFAM:PF01176	PFscan:PS50832
PANTHER:PTHR33370	UniProt:Q94KR9	InterPro:RNA-binding_domain_S1_IF1	InterPro:S1_dom	SMART:SM00316	SUPFAM:SSF50249
EnsemblPlantsGene:Solyc12g098350.1	EnsemblPlants:Solyc12g098350.1.1	InterPro:TIF_IF1	TIGRFAMs:TIGR00008	UniParc:UPI00000AACEB	SEG:seg

Description

infATranslation initiation factor IF-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94KR9]

Coordinates

chr12:-:65886301..65886771

Molecular Weight (calculated)

17405.0 Da

IEP (calculated)

10.978

GRAVY (calculated)

-0.603

Length

156 amino acids

Sequence
(BLAST)

001: MASLSWWNPA PATAAMAACS PTPTSCKTSN SLALPRSVFV SKQEELMKQA KSLLVKTQQQ SKKKKNNSTN SRRTTSIQCL SQEQKWTHEG SITESLPNGM
101: FRVKLDNADV VLGYISGKIR KNFIRLLPGD RVKIEVSRYD SSKGRIIYRL RGGREG

Best Arabidopsis Sequence Match ( AT4G11175.1 )
(BLAST)

001: MLQLCSTFRP QLLLPCQFRF TNGVLIPQIN YVASNSVVNI RPMIRCQRAS GGRGGANRSK PAKPQVKEGS NKTVIEGLVT ESLPNGMFRV DLENGDNILG
101: YICGKIRKNF IRILPGDKVK VEMSVYDSTK GRIIFRMSSR D

Arabidopsis Description

Translation initiation factor IF-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82499]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.