CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86812	Canola	mitochondrion, plastid	100.0	100.0
Bra035247.1-P	Field mustard	plastid	97.87	97.87
CDX86811	Canola	plastid	97.16	97.16
AT4G11175.1	Thale cress	mitochondrion, plastid	86.52	86.52
HORVU0Hr1G035290.1	Barley	cytosol	24.11	44.74
HORVU0Hr1G037630.1	Barley	cytosol	24.11	44.74
HORVU0Hr1G034480.1	Barley	cytosol	24.11	44.74
HORVU0Hr1G025190.1	Barley	cytosol	24.11	44.74
HORVU0Hr1G024630.1	Barley	cytosol	24.11	44.74
HORVU0Hr1G026200.1	Barley	cytosol	32.62	42.99
HORVU6Hr1G037250.1	Barley	cytosol	32.62	42.99
HORVU5Hr1G064730.1	Barley	cytosol	32.62	42.99
HORVU0Hr1G037950.1	Barley	cytosol	32.62	42.99
HORVU0Hr1G037370.1	Barley	cytosol	32.62	42.99
HORVU0Hr1G036980.1	Barley	cytosol	32.62	42.99
GRMZM5G830210_P01	Maize	plastid	32.62	42.99
HORVU0Hr1G033710.1	Barley	cytosol	32.62	42.99
HORVU0Hr1G033440.1	Barley	cytosol	32.62	42.99
HORVU0Hr1G032930.1	Barley	cytosol	32.62	42.99
HORVU0Hr1G028370.1	Barley	cytosol	32.62	42.99
HORVU0Hr1G026810.1	Barley	cytosol	32.62	42.99
HORVU0Hr1G026270.1	Barley	cytosol	32.62	42.99
HORVU3Hr1G110940.1	Barley	cytosol	19.86	42.42
CAA33930	Rice	cytosol	31.91	42.06
TraesCS1A01G130000.1	Wheat	cytosol	30.5	40.95
AGP50789	Barley	cytosol	32.62	40.71
TraesCS3A01G454200.1	Wheat	cytosol	31.91	40.54
TraesCS5B01G312400.1	Wheat	cytosol	31.91	40.18
KRH03161	Soybean	nucleus	39.01	39.86
TraesCS3A01G431900.1	Wheat	cytosol	31.21	39.64
KRH56784	Soybean	nucleus	38.3	37.76
HORVU7Hr1G107570.1	Barley	cytosol	28.37	37.74
HORVU5Hr1G070820.1	Barley	peroxisome	19.86	37.33
PGSC0003DMT400019914	Potato	extracellular, mitochondrion, plastid	39.01	35.48
Solyc12g098350.1.1	Tomato	plastid	37.59	33.97

Protein Annotations

MapMan:17.7.3.2	Gene3D:2.40.50.140	GO:A0A078DCL3	UniProt:A0A078DCL3	EnsemblPlants:CDY61889	ProteinID:CDY61889
ProteinID:CDY61889.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488
GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00034543001	InterPro:IPR006196	HAMAP:MF_00075	InterPro:NA-bd_OB-fold
PFAM:PF01176	PFscan:PS50832	PANTHER:PTHR33370	InterPro:RNA-binding_domain_S1_IF1	InterPro:S1_dom	SMART:SM00316
SUPFAM:SSF50249	InterPro:TIF_IF1	TIGRFAMs:TIGR00008	UniParc:UPI0004EDF24A	:	:

Description

BnaCnng38690DBnaA09g22020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078DCL3]

Coordinates

chrLK034056:-:37151..38200

Molecular Weight (calculated)

15588.1 Da

IEP (calculated)

11.046

GRAVY (calculated)

-0.213

Length

141 amino acids

Sequence
(BLAST)

001: MLQLCSTLRP QLLFSPQIRF TDGVLIPRLN FGSSSSVVSF RPVIRCQRVS GGRGGANRSK PAKPPVKEGS NKTVIEGLVT ESLPNGMFRV DLENGDNVLG
101: YICGKIRKNF IRILPGDKVK VEMSVYDSTK GRIVFRMSSR D

Best Arabidopsis Sequence Match ( AT4G11175.1 )
(BLAST)

001: MLQLCSTFRP QLLLPCQFRF TNGVLIPQIN YVASNSVVNI RPMIRCQRAS GGRGGANRSK PAKPQVKEGS NKTVIEGLVT ESLPNGMFRV DLENGDNILG
101: YICGKIRKNF IRILPGDKVK VEMSVYDSTK GRIIFRMSSR D

Arabidopsis Description

Translation initiation factor IF-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82499]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.