Factsheet for PGSC0003DMT400019914

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, extracellular

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

extracellular: 22313117
mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g098350.1.1	Tomato	plastid	92.26	91.67
HORVU0Hr1G037630.1	Barley	cytosol	25.81	52.63
HORVU0Hr1G024630.1	Barley	cytosol	25.81	52.63
HORVU0Hr1G025190.1	Barley	cytosol	25.81	52.63
HORVU0Hr1G035290.1	Barley	cytosol	25.81	52.63
HORVU0Hr1G034480.1	Barley	cytosol	25.81	52.63
HORVU0Hr1G026810.1	Barley	cytosol	34.84	50.47
HORVU5Hr1G064730.1	Barley	cytosol	34.84	50.47
HORVU6Hr1G037250.1	Barley	cytosol	34.84	50.47
HORVU0Hr1G037950.1	Barley	cytosol	34.84	50.47
HORVU0Hr1G037370.1	Barley	cytosol	34.84	50.47
HORVU0Hr1G036980.1	Barley	cytosol	34.84	50.47
HORVU0Hr1G033710.1	Barley	cytosol	34.84	50.47
HORVU0Hr1G033440.1	Barley	cytosol	34.84	50.47
HORVU0Hr1G032930.1	Barley	cytosol	34.84	50.47
HORVU0Hr1G028370.1	Barley	cytosol	34.84	50.47
HORVU0Hr1G026270.1	Barley	cytosol	34.84	50.47
HORVU0Hr1G026200.1	Barley	cytosol	34.84	50.47
GRMZM5G830210_P01	Maize	plastid	34.84	50.47
CAA33930	Rice	cytosol	34.19	49.53
TraesCS1A01G130000.1	Wheat	cytosol	32.9	48.57
AGP50789	Barley	cytosol	34.84	47.79
TraesCS3A01G431900.1	Wheat	cytosol	32.9	45.95
TraesCS3A01G454200.1	Wheat	cytosol	32.9	45.95
TraesCS5B01G312400.1	Wheat	cytosol	32.9	45.54
Bra040979.1-P	Field mustard	cytosol, nucleus	23.87	45.12
KRH03161	Soybean	nucleus	37.42	42.03
HORVU7Hr1G107570.1	Barley	cytosol	28.39	41.51
KRH56784	Soybean	nucleus	38.06	41.26
HORVU3Hr1G110940.1	Barley	cytosol	16.77	39.39
CDY61889	Canola	mitochondrion, plastid	35.48	39.01
CDX86812	Canola	mitochondrion, plastid	35.48	39.01
CDX86811	Canola	plastid	34.84	38.3
AT4G11175.1	Thale cress	mitochondrion, plastid	34.84	38.3
HORVU5Hr1G070820.1	Barley	peroxisome	17.42	36.0

Protein Annotations

EntrezGene:102587284	MapMan:17.7.3.2	Gene3D:2.40.50.140	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR006196
UniProt:M1ACR9	HAMAP:MF_00075	InterPro:NA-bd_OB-fold	PFAM:PF01176	EnsemblPlantsGene:PGSC0003DMG400007705	PGSC:PGSC0003DMG400007705
EnsemblPlants:PGSC0003DMT400019914	PFscan:PS50832	PANTHER:PTHR33370	InterPro:RNA-binding_domain_S1_IF1	InterPro:S1_dom	SMART:SM00316
SUPFAM:SSF50249	InterPro:TIF_IF1	TIGRFAMs:TIGR00008	UniParc:UPI00029618F0	RefSeq:XP_006349930.1	SEG:seg

Description

Translation initiation factor IF-1, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400007705]

Coordinates

chr12:-:59148681..59151610

Molecular Weight (calculated)

17288.8 Da

IEP (calculated)

10.830

GRAVY (calculated)

-0.582

Length

155 amino acids

Sequence
(BLAST)

001: MVSLSWWNPA PATAAMAACS PSPTSCKTSN SLALPRSVFV SKQEELMKQA KGLLVKTEQQ SKKKNNSTNS RRTTNIQCLS QEQKWTHEGS ITESLPNGMF
101: RVKLDNADVV LGYISGKIRK NFIRLLPGDR VKIEVSRYDS SKGRIIYRLR GGREG

Best Arabidopsis Sequence Match ( AT4G11175.1 )
(BLAST)

001: MLQLCSTFRP QLLLPCQFRF TNGVLIPQIN YVASNSVVNI RPMIRCQRAS GGRGGANRSK PAKPQVKEGS NKTVIEGLVT ESLPNGMFRV DLENGDNILG
101: YICGKIRKNF IRILPGDKVK VEMSVYDSTK GRIIFRMSSR D

Arabidopsis Description

Translation initiation factor IF-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82499]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.