Factsheet for HORVU0Hr1G033710.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G037250.1	Barley	cytosol	100.0	100.0
HORVU0Hr1G036980.1	Barley	cytosol	100.0	100.0
HORVU0Hr1G035290.1	Barley	cytosol	71.03	100.0
HORVU0Hr1G034480.1	Barley	cytosol	71.03	100.0
HORVU0Hr1G033440.1	Barley	cytosol	100.0	100.0
HORVU0Hr1G032930.1	Barley	cytosol	100.0	100.0
HORVU0Hr1G026810.1	Barley	cytosol	100.0	100.0
HORVU0Hr1G026270.1	Barley	cytosol	100.0	100.0
HORVU0Hr1G026200.1	Barley	cytosol	100.0	100.0
HORVU0Hr1G037950.1	Barley	cytosol	100.0	100.0
HORVU5Hr1G064730.1	Barley	cytosol	100.0	100.0
HORVU0Hr1G037370.1	Barley	cytosol	96.26	96.26
HORVU0Hr1G028370.1	Barley	cytosol	96.26	96.26
HORVU0Hr1G025190.1	Barley	cytosol	67.29	94.74
HORVU0Hr1G024630.1	Barley	cytosol	67.29	94.74
HORVU0Hr1G037630.1	Barley	cytosol	67.29	94.74
GRMZM5G830210_P01	Maize	plastid	91.59	91.59
CAA33930	Rice	cytosol	91.59	91.59
AGP50789	Barley	cytosol	96.26	91.15
Bra040979.1-P	Field mustard	cytosol, nucleus	62.62	81.71
HORVU3Hr1G110940.1	Barley	cytosol	42.06	68.18
HORVU7Hr1G107570.1	Barley	cytosol	65.42	66.04
HORVU5Hr1G070820.1	Barley	peroxisome	37.38	53.33
KRH03161	Soybean	nucleus	45.79	35.51
KRH56784	Soybean	nucleus	46.73	34.97
PGSC0003DMT400019914	Potato	extracellular, mitochondrion, plastid	50.47	34.84
AT4G11175.1	Thale cress	mitochondrion, plastid	44.86	34.04
CDX86811	Canola	plastid	43.93	33.33
Solyc12g098350.1.1	Tomato	plastid	47.66	32.69
CDY61889	Canola	mitochondrion, plastid	42.99	32.62
CDX86812	Canola	mitochondrion, plastid	42.99	32.62

Protein Annotations

MapMan:17.7.3.2	Gene3D:2.40.50.140	UniProt:A0A287TY42	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0005488	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:HORVU0Hr1G033710	EnsemblPlants:HORVU0Hr1G033710.1
InterPro:IPR006196	HAMAP:MF_00075	InterPro:NA-bd_OB-fold	PFAM:PF01176	PFscan:PS50832	PANTHER:PTHR33370
InterPro:RNA-binding_domain_S1_IF1	InterPro:S1_dom	SMART:SM00316	SUPFAM:SSF50249	InterPro:TIF_IF1	TIGRFAMs:TIGR00008
UniParc:UPI000B46E479	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchrUn:+:204416829..204417356

Molecular Weight (calculated)

12427.9 Da

IEP (calculated)

10.006

GRAVY (calculated)

-0.890

Length

107 amino acids

Sequence
(BLAST)

001: MTEKKNRREK KNPREAKVTF EGLVTEALPN GMFRVRLEND TIILGYISGK IRSSSIRILM GDRVKIEVSR YDSSKGRIIY RLPHKDSKRI EDSKDSEDLK
101: DSVDELE

Best Arabidopsis Sequence Match ( AT4G11175.1 )
(BLAST)

001: MLQLCSTFRP QLLLPCQFRF TNGVLIPQIN YVASNSVVNI RPMIRCQRAS GGRGGANRSK PAKPQVKEGS NKTVIEGLVT ESLPNGMFRV DLENGDNILG
101: YICGKIRKNF IRILPGDKVK VEMSVYDSTK GRIIFRMSSR D

Arabidopsis Description

Translation initiation factor IF-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82499]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.