Factsheet for HORVU0Hr1G035290.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 1
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G034480.1	Barley	cytosol	100.0	100.0
HORVU0Hr1G037630.1	Barley	cytosol	94.74	94.74
HORVU0Hr1G024630.1	Barley	cytosol	94.74	94.74
HORVU0Hr1G025190.1	Barley	cytosol	94.74	94.74
Bra040979.1-P	Field mustard	cytosol, nucleus	88.16	81.71
HORVU0Hr1G026270.1	Barley	cytosol	100.0	71.03
HORVU0Hr1G037950.1	Barley	cytosol	100.0	71.03
HORVU0Hr1G036980.1	Barley	cytosol	100.0	71.03
HORVU0Hr1G033710.1	Barley	cytosol	100.0	71.03
HORVU0Hr1G033440.1	Barley	cytosol	100.0	71.03
HORVU0Hr1G032930.1	Barley	cytosol	100.0	71.03
HORVU0Hr1G026810.1	Barley	cytosol	100.0	71.03
HORVU0Hr1G026200.1	Barley	cytosol	100.0	71.03
HORVU5Hr1G064730.1	Barley	cytosol	100.0	71.03
HORVU6Hr1G037250.1	Barley	cytosol	100.0	71.03
HORVU0Hr1G028370.1	Barley	cytosol	94.74	67.29
HORVU0Hr1G037370.1	Barley	cytosol	94.74	67.29
CAA33930	Rice	cytosol	90.79	64.49
TraesCS3A01G431900.1	Wheat	cytosol	93.42	63.96
AGP50789	Barley	cytosol	94.74	63.72
GRMZM5G830210_P01	Maize	plastid	89.47	63.55
TraesCS5B01G312400.1	Wheat	cytosol	93.42	63.39
HORVU5Hr1G070820.1	Barley	peroxisome	52.63	53.33
HORVU7Hr1G107570.1	Barley	cytosol	57.89	41.51
HORVU3Hr1G110940.1	Barley	cytosol	28.95	33.33
KRH03161	Soybean	nucleus	51.32	28.26
KRH56784	Soybean	nucleus	51.32	27.27
PGSC0003DMT400019914	Potato	extracellular, mitochondrion, plastid	52.63	25.81
Solyc12g098350.1.1	Tomato	plastid	52.63	25.64
AT4G11175.1	Thale cress	mitochondrion, plastid	47.37	25.53
CDX86811	Canola	plastid	46.05	24.82
CDY61889	Canola	mitochondrion, plastid	44.74	24.11
CDX86812	Canola	mitochondrion, plastid	44.74	24.11

Protein Annotations

MapMan:17.7.3.2	Gene3D:2.40.50.140	UniProt:A0A287EBC6	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0005488	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:HORVU0Hr1G035290	EnsemblPlants:HORVU0Hr1G035290.1
InterPro:IPR006196	InterPro:NA-bd_OB-fold	PFAM:PF01176	PFscan:PS50832	PANTHER:PTHR33370	InterPro:RNA-binding_domain_S1_IF1
SUPFAM:SSF50249	InterPro:TIF_IF1	TIGRFAMs:TIGR00008	UniParc:UPI000B461443	SEG:seg	:

Description

No Description!

Coordinates

chrchrUn:+:209818781..209819215

Molecular Weight (calculated)

8873.6 Da

IEP (calculated)

8.962

GRAVY (calculated)

-0.689

Length

76 amino acids

Sequence
(BLAST)

1: MFRVRLENDT IILGYISGKI RSSSIRILMG DRVKIEVSRY DSSKGRIIYR LPHKDSKRIE DSKDSEDLKD SVDELE

Best Arabidopsis Sequence Match ( AT4G11175.1 )
(BLAST)

001: MLQLCSTFRP QLLLPCQFRF TNGVLIPQIN YVASNSVVNI RPMIRCQRAS GGRGGANRSK PAKPQVKEGS NKTVIEGLVT ESLPNGMFRV DLENGDNILG
101: YICGKIRKNF IRILPGDKVK VEMSVYDSTK GRIIFRMSSR D

Arabidopsis Description

Translation initiation factor IF-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82499]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.